Variant report

Variant	esv3455664
Chromosome Location	chr11:4574423-4574860
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 58 )

Variant overlapped rSNPs/rCNVs (count:31 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs561471119	chr11:4574449-4574450	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs2115932	chr11:4574457-4574458	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs541747262	chr11:4574461-4574462	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs560689277	chr11:4574495-4574496	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs546224846	chr11:4574497-4574498	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs529712590	chr11:4574500-4574501	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs549853110	chr11:4574532-4574533	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs74052420	chr11:4574554-4574555	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs574210978	chr11:4574567-4574568	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs148534682	chr11:4574579-4574580	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs563042341	chr11:4574592-4574593	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs533543003	chr11:4574604-4574605	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs183164033	chr11:4574606-4574607	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs559980702	chr11:4574630-4574631	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs527425134	chr11:4574637-4574638	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs117070635	chr11:4574638-4574639	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs532283651	chr11:4574646-4574647	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs567266135	chr11:4574662-4574663	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs75878594	chr11:4574680-4574681	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs554248473	chr11:4574687-4574688	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs187911345	chr11:4574693-4574694	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs191533509	chr11:4574719-4574720	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs60359183	chr11:4574720-4574721	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs111388863	chr11:4574725-4574726	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs553591451	chr11:4574749-4574750	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs548486853	chr11:4574754-4574755	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs146498027	chr11:4574785-4574786	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs374812316	chr11:4574795-4574796	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs2709128	chr11:4574838-4574839	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs573999309	chr11:4574840-4574841	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs79145711	chr11:4574848-4574849	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:58)

Disease	PMID	Source
Neuroblastoma	18923191	CNVD
Breast cancer	19432969	CNVD
Alzheimer''s disease	17576883	CNVD
Long-qt syndrome	17576883	CNVD
Emphysema	19352772	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Chordoma	18071362	CNVD
Breast cancer	16608533	CNVD
Cancer	21183584	CNVD
Gastric adenocarcinoma	19115996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Burkitt''s lymphoma	19759907	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Thyroid cancer	19087340	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Wilms tumour	21544195	CNVD
Parathyroid adenoma	22454399	CNVD
Chordoma	21602918	CNVD
Breast cancer	21949216	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	19222835	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Beckwith-Wiedemann syndrome	21518781	CNVD
Wilms tumour	21518781	CNVD
Hepatoblastoma	21518781	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastric cancer	17908304	CNVD
Barrett''s syndrome	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Myelofibrosis	22110671	CNVD
Glioma	17123091	CNVD
Lung cancer	16773561	CNVD
Neuroblastoma	21124317	CNVD
Lung adenocarcinoma	17086460	CNVD
Lung cancer	17086460	CNVD
Schizophrenia	21399695	CNVD
Gastric cancer	16891809	CNVD
Cancer	17160897	CNVD
Multiple myeloma	16616336	CNVD
small cell lung cancer	20016488	CNVD
Bipolar disorder	19114987	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:4568600-4580600	Weak transcription	Gastric	stomach

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