Variant report

Variant	esv34562
Chromosome Location	chr1:76094234-76121738
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:294)
CpG islands
(count:61)
Chromatin interactive
region (count:20)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:294 , 50 per page) page: 1 2 3 4 5 6

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr1:76105897-76106242	K562	blood:	n/a	n/a
2	ATF1	chr1:76105885-76106222	K562	blood:	n/a	n/a
3	ATF1	chr1:76109354-76109542	K562	blood:	n/a	n/a
4	ATF2	chr1:76095599-76095993	H1-hESC	embryonic stem cell:	n/a	n/a
5	BHLHE40	chr1:76105917-76106244	K562	blood:	n/a	n/a
6	BHLHE40	chr1:76107180-76107438	K562	blood:	n/a	n/a
7	BHLHE40	chr1:76098240-76098424	GM12878	blood:	n/a	n/a
8	BHLHE40	chr1:76105293-76105429	K562	blood:	n/a	n/a
9	CBX3	chr1:76112759-76113226	K562	blood:	n/a	n/a
10	CCNT2	chr1:76105959-76106219	K562	blood:	n/a	n/a
11	CEBPB	chr1:76097153-76097386	MCF-7	breast:	n/a	chr1:76097287-76097298
12	CEBPB	chr1:76103189-76103319	A549	lung:	n/a	n/a
13	CEBPB	chr1:76097115-76097483	HepG2	liver:	n/a	chr1:76097287-76097298
14	CEBPB	chr1:76097234-76097355	HepG2	liver:	n/a	chr1:76097287-76097298
15	CEBPB	chr1:76103067-76103358	K562	blood:	n/a	n/a
16	CEBPB	chr1:76097144-76097360	IMR90	lung:	n/a	chr1:76097287-76097298
17	CEBPB	chr1:76097115-76097389	K562	blood:	n/a	chr1:76097287-76097298
18	CEBPB	chr1:76105433-76105469	K562	blood:	n/a	n/a
19	CEBPB	chr1:76107129-76107469	K562	blood:	n/a	n/a
20	CEBPB	chr1:76107117-76107372	K562	blood:	n/a	n/a
21	CHD2	chr1:76105240-76105351	K562	blood:	n/a	n/a
22	CTCF	chr1:76105905-76106175	K562	blood:	n/a	n/a
23	CTCF	chr1:76098113-76098355	Pancreas_OC	pancreas:	n/a	n/a
24	CTCF	chr1:76097991-76098474	HCT-116	colon:	n/a	n/a
25	CTCF	chr1:76098097-76098392	K562	blood:	n/a	n/a
26	CTCF	chr1:76098520-76098670	HPF	lung:	n/a	n/a
27	CTCF	chr1:76098140-76098290	GM12866	blood:	n/a	n/a
28	CTCF	chr1:76098140-76098290	GM12874	blood:	n/a	n/a
29	CTCF	chr1:76097020-76097170	BJ	skin:	n/a	n/a
30	CTCF	chr1:76098093-76098340	SK-N-SH_RA	brain:	n/a	n/a
31	CTCF	chr1:76098160-76098310	AG10803	skin:	n/a	n/a
32	CTCF	chr1:76097880-76098030	GM12866	blood:	n/a	n/a
33	CTCF	chr1:76098120-76098270	HEEpiC	esophagus:	n/a	n/a
34	CTCF	chr1:76098144-76098294	NHEK	skin:	n/a	n/a
35	CTCF	chr1:76098200-76098350	HRE	kidney:	n/a	n/a
36	CTCF	chr1:76098107-76098357	LNCaP	prostate:	n/a	n/a
37	CTCF	chr1:76098193-76098239	GM19240	blood:	n/a	n/a
38	CTCF	chr1:76098160-76098310	BE2_C	brain:	n/a	n/a
39	CTCF	chr1:76098140-76098290	HCPEpiC	choroid plexus:	n/a	n/a
40	CTCF	chr1:76098140-76098290	GM12870	blood:	n/a	n/a
41	CTCF	chr1:76098140-76098290	HFF	foreskin:	n/a	n/a
42	CTCF	chr1:76098160-76098310	GM12866	blood:	n/a	n/a
43	CTCF	chr1:76098200-76098350	HMEC	breast:	n/a	n/a
44	CTCF	chr1:76098140-76098290	AG09319	gingival:	n/a	n/a
45	CTCF	chr1:76098140-76098290	GM12801	blood:	n/a	n/a
46	CTCF	chr1:76098140-76098290	K562	blood:	n/a	n/a
47	CTCF	chr1:76097953-76098422	HCT-116	colon:	n/a	n/a
48	CTCF	chr1:76098160-76098310	HRE	kidney:	n/a	n/a
49	CTCF	chr1:76098120-76098270	HFF-Myc	foreskin:	n/a	n/a
50	CTCF	chr1:76098220-76098370	WI-38	lung:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr1:76095838-76095888	NT2-D1	testis:	n/a
2	chr1:76095838-76095888	PANC-1	pancreas:	n/a
3	chr1:76095838-76095888	NH-A	brain:	n/a
4	chr1:76095838-76095888	IMR90	lung:	fetal
5	chr1:76095838-76095888	AoSMC	blood vessel:	n/a
6	chr1:76095838-76095888	SKMC	muscle:	n/a
7	chr1:76095838-76095888	ProgFib	skin:	n/a
8	chr1:76095838-76095888	U87	brain:	n/a
9	chr1:76095838-76095888	Caco-2	colon:	n/a
10	chr1:76095838-76095888	SK-N-SH_RA	brain:	n/a
11	chr1:76095838-76095888	GM19239	blood:	n/a
12	chr1:76095838-76095888	GM12892	blood:	n/a
13	chr1:76095838-76095888	SK-N-MC	brain:	n/a
14	chr1:76095838-76095888	NHDF-neo	bronchial:	n/a
15	chr1:76095838-76095888	MCF-7	breast:	n/a
16	chr1:76095838-76095888	HL-60	blood:	n/a
17	chr1:76095838-76095888	HPAEpiC	pulmonary alveolar:	n/a
18	chr1:76095838-76095888	HRPEpiC	eye:	n/a
19	chr1:76095838-76095888	A549	lung:	n/a
20	chr1:76095838-76095888	ovcar-3	ovarian:	n/a
21	chr1:76095838-76095888	AG09309	skin:	n/a
22	chr1:76095838-76095888	GM12878	blood:	n/a
23	chr1:76095838-76095888	RPTEC	kidney:	n/a
24	chr1:76095838-76095888	H1-hESC	embryonic stem cell:	embryo
25	chr1:76095838-76095888	HRCEpiC	kidney:	n/a
26	chr1:76095838-76095888	SAEC	small airway:	n/a
27	chr1:76095838-76095888	HCF	heart:	n/a
28	chr1:76095838-76095888	T-47D	breast:	n/a
29	chr1:76095838-76095888	LNCaP	prostate:	n/a
30	chr1:76095838-76095888	Hepatocyte	liver:	n/a
31	chr1:76095838-76095888	HRE	kidney:	n/a
32	chr1:76095838-76095888	HIPEpiC	eye:	n/a
33	chr1:76095838-76095888	PFSK-1	brain:	n/a
34	chr1:76095838-76095888	HCM	heart:	n/a
35	chr1:76095838-76095888	HCPEpiC	choroid plexus:	n/a
36	chr1:76095838-76095888	HEK293	kidney:	embryo
37	chr1:76095838-76095888	AG09319	gingival:	n/a
38	chr1:76095838-76095888	HEEpiC	esophagus:	n/a
39	chr1:76095838-76095888	BE2_C	brain:	n/a
40	chr1:76095838-76095888	AG04450	lung:	fetal
41	chr1:76095838-76095888	Jurkat	blood:	n/a
42	chr1:76095838-76095888	AG04449	skin:	fetal
43	chr1:76095838-76095888	GM12891	blood:	n/a
44	chr1:76095838-76095888	GM06990	blood:	n/a
45	chr1:76095838-76095888	BJ	skin:	n/a
46	chr1:76095838-76095888	HepG2	liver:	n/a
47	chr1:76095838-76095888	HMEC	breast:	n/a
48	chr1:76095838-76095888	NB4	blood:	n/a
49	chr1:76095838-76095888	PrEC	prostate:	n/a
50	chr1:76095838-76095888	ECC-1	luminal epithelium:	n/a

(count:20 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:76098237..76098781-chr1:76108716..76109281,2	K562	blood:
2	chr1:76102793..76106233-chr1:76108594..76111145,3	K562	blood:
3	chr1:76088182..76090967-chr1:76093940..76095559,2	K562	blood:
4	chr1:76096029..76098574-chr1:76101114..76103972,2	K562	blood:
5	chr1:76096029..76098574-chr1:76101114..76103972,2	K562	blood:
6	chr1:76098237..76098781-chr1:76108716..76109281,2	K562	blood:
7	chr1:76116317..76118957-chr1:76120302..76123457,3	K562	blood:
8	chr1:76094932..76097642-chr1:76105459..76107452,2	K562	blood:
9	chr1:75731173..75731698-chr1:76097693..76098339,2	MCF-7	breast:
10	chr1:76102793..76106233-chr1:76108594..76111145,3	K562	blood:
11	chr1:76105051..76106564-chr1:76262176..76264540,2	K562	blood:
12	chr1:76116317..76118957-chr1:76120302..76123457,3	K562	blood:
13	chr1:75698929..75699675-chr1:76097798..76098711,3	K562	blood:
14	chr1:76103722..76106233-chr1:76108885..76111145,2	K562	blood:
15	chr1:76094932..76097642-chr1:76105459..76107452,2	K562	blood:
16	chr1:76097324..76099781-chr1:76183811..76186655,2	K562	blood:
17	chr1:76103722..76106233-chr1:76108885..76111145,2	K562	blood:
18	chr1:76094259..76097858-chr1:76188776..76191867,4	K562	blood:
19	chr1:76087110..76089218-chr1:76095459..76097902,2	MCF-7	breast:
20	chr1:76080604..76083289-chr1:76094142..76096069,2	K562	blood:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLC44A5-4	chr1:76103852-76104725	NONHSAT003984
2	lnc-SLC44A5-4	chr1:76107988-76108177	NONHSAT003985
3	lnc-SLC44A5-4	chr1:76105925-76108177	NONHSAT003984

No data

Variant related genes	Relation type
ENSG00000230863	TF binding region
ENSG00000230863	CpG island
ENSG00000057468	chromatin interactions
ENSG00000178193	chromatin interactions
ENSG00000117054	chromatin interactions

Extended variants
information (count: 380 )
Associated
traits (count: 110 )

Variant overlapped rSNPs/rCNVs (count:380 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs11163860	chr1:76094234-76094235	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs370125527	chr1:76094235-76094236	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs566976089	chr1:76094279-76094280	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs531033986	chr1:76094299-76094300	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs374472537	chr1:76094322-76094323	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs575589105	chr1:76094360-76094361	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs536101311	chr1:76094380-76094381	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs555796849	chr1:76094402-76094403	Bivalent Enhancer Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs190480309	chr1:76094539-76094540	Bivalent Enhancer Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs145453788	chr1:76094590-76094591	Bivalent Enhancer Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs148910971	chr1:76094602-76094603	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs547157185	chr1:76094605-76094606	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs35926116	chr1:76094610-76094611	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs116201083	chr1:76094611-76094612	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs533085525	chr1:76094628-76094629	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs376443957	chr1:76094635-76094636	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs115887588	chr1:76094649-76094650	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs147727934	chr1:76094670-76094671	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs368420229	chr1:76094671-76094672	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs143602446	chr1:76094703-76094704	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs9919193	chr1:76094769-76094770	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs535245000	chr1:76094811-76094812	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs72981025	chr1:76094829-76094830	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs571845315	chr1:76094873-76094874	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs200193528	chr1:76094890-76094891	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs74665031	chr1:76094897-76094898	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs371407925	chr1:76094900-76094901	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs4141465	chr1:76094901-76094902	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs116053422	chr1:76094938-76094939	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs74088928	chr1:76094948-76094949	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs1535157	chr1:76095053-76095054	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs186853963	chr1:76095067-76095068	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs554660325	chr1:76095076-76095077	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs577046621	chr1:76095122-76095123	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs367707240	chr1:76095126-76095127	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs540308278	chr1:76095173-76095174	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs148045329	chr1:76095199-76095200	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
38	rs140957367	chr1:76095226-76095227	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
39	rs545021223	chr1:76095297-76095298	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
40	rs211739	chr1:76095298-76095299	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs559469438	chr1:76095360-76095361	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
42	rs74816010	chr1:76095388-76095389	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
43	rs814856	chr1:76095434-76095435	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs542064343	chr1:76095448-76095449	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
45	rs567389698	chr1:76095491-76095492	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs191489162	chr1:76095555-76095556	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs372545737	chr1:76095556-76095557	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
48	rs374034842	chr1:76095596-76095597	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs571920117	chr1:76095618-76095619	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs539178018	chr1:76095734-76095735	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:110)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Colorectal cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Coronary Disease	20032323	CNVD
Prostate cancer	21965145	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Stargardt''s disease	17277736	CNVD
Neuroblastoma	17897457	CNVD
Uveal melanoma	21693616	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-syndromic sensorineural hearing loss	22290220	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	21264507	CNVD
Acute myeloid leukemia	16864856	CNVD
Astrocytoma	17387387	CNVD
Cancer	21499728	CNVD
Glioblastoma multiforme	17387387	CNVD
Oligodendroglial tumors	17285580	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Neuroblastoma	17535989	CNVD
Pheochromocytoma	17535989	CNVD
Prostate cancer	16705090	CNVD
Astrocytoma	17934521	CNVD
Colorectal cancer	19359472	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Neuroblastoma	17533364	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	21637470	CNVD
HIV/AIDS	22032296	CNVD
Schizophrenia	19415332	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Autism	22495311	CNVD
Non-small cell lung cancer	21385341	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Chordoma	21602918	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Melanoma	18172304	CNVD
Multiple myeloma	16461302	CNVD
Melanoma	17363583	CNVD
Cancer	21129771	CNVD
Autosomal dominant nocturnal frontal lobe epilepsy	18472482	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-small cell lung cancer	20864512	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Thrombocytopenia-absent radius syndrome	21933853	CNVD
Psychiatric disorder	22848183	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Hepatocellular carcinoma	16750200	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	20409316	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Lung cancer	18438408	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17393978	CNVD
Cervical cancer	21062161	CNVD
Cancer	21183584	CNVD
Breast cancer	21785460	CNVD
Breast cancer	21364760	CNVD
Rett syndrome	21593744	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16608533	CNVD
Ovarian cancer	21720365	CNVD
Breast cancer	17133270	CNVD
Type 2 diabetes	21956041	CNVD
Uveal melanoma	20484589	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Intellectual disability	22102821	CNVD
Cancer	20164919	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
abnormal development	18461090	CNVD
Ewing''s sarcoma	17952124	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Poland''s syndrome	22110015	CNVD
Glioblastoma multiforme	22286061	CNVD
Glioblastoma multiforme	21922591	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Cancer	22429812	CNVD
Effusion lymphoma	18079361	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	22522925	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76092400-76095800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:76094400-76094800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
3	chr1:76094600-76094800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
4	chr1:76094600-76095000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:76094600-76095400	Enhancers	HepG2	liver
6	chr1:76094600-76096200	Enhancers	H1 Cell Line	embryonic stem cell
7	chr1:76094600-76096800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr1:76094800-76096200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr1:76094800-76096200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr1:76094800-76096800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr1:76095000-76095200	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:76095000-76095200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr1:76095000-76096200	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr1:76095000-76096600	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr1:76095200-76095400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr1:76095200-76096200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr1:76095200-76096200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr1:76095200-76096200	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr1:76095200-76096200	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr1:76095400-76095600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr1:76095400-76096200	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr1:76095400-76096600	Weak transcription	HepG2	liver
23	chr1:76095400-76096800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr1:76095600-76096200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr1:76095800-76096200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr1:76095800-76096200	Enhancers	H9 Cell Line	embryonic stem cell
27	chr1:76095800-76096200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr1:76095800-76096200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr1:76096200-76098600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr1:76096400-76097600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr1:76096600-76097200	Enhancers	HepG2	liver
32	chr1:76098600-76098800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr1:76104400-76104800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr1:76104800-76105200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr1:76105200-76106200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr1:76105200-76106200	Enhancers	Pancreas	Pancrea
37	chr1:76105200-76106400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr1:76105200-76106400	Enhancers	K562	blood
39	chr1:76105200-76106600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr1:76105800-76106200	Enhancers	Esophagus	oesophagus
41	chr1:76108000-76108200	Enhancers	Esophagus	oesophagus
42	chr1:76109200-76109800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr1:76121000-76121400	ZNF genes & repeats	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links