Variant report
Variant | esv3456856 |
---|---|
Chromosome Location | chr22:20347602-20507250 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:2526)
- CpG islands (count:1342)
- Chromatin interactive region (count:1)
- LncRNA region (count:4)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | BATF | chr22:20359857-20360194 | GM12878 | blood: | n/a | n/a |
2 | BATF | chr22:20378615-20378824 | GM12878 | blood: | n/a | n/a |
3 | BATF | chr22:20379205-20379431 | GM12878 | blood: | n/a | n/a |
4 | BATF | chr22:20348946-20349197 | GM12878 | blood: | n/a | n/a |
5 | BATF | chr22:20355305-20355563 | GM12878 | blood: | n/a | n/a |
6 | BATF | chr22:20445015-20445218 | GM12878 | blood: | n/a | n/a |
7 | BATF | chr22:20427669-20427862 | GM12878 | blood: | n/a | n/a |
8 | BATF | chr22:20365733-20366145 | GM12878 | blood: | n/a | n/a |
9 | BATF | chr22:20378235-20378418 | GM12878 | blood: | n/a | n/a |
10 | BCL11A | chr22:20350736-20350907 | GM12878 | blood: | n/a | n/a |
11 | BCL11A | chr22:20349704-20349929 | GM12878 | blood: | n/a | n/a |
12 | BCL11A | chr22:20351272-20351516 | GM12878 | blood: | n/a | n/a |
13 | BCL11A | chr22:20365735-20366054 | GM12878 | blood: | n/a | n/a |
14 | BCL11A | chr22:20359843-20360086 | GM12878 | blood: | n/a | n/a |
15 | BCL11A | chr22:20350132-20350302 | GM12878 | blood: | n/a | n/a |
16 | BCL11A | chr22:20365860-20366118 | GM12878 | blood: | n/a | n/a |
17 | BCL11A | chr22:20359571-20360081 | GM12878 | blood: | n/a | n/a |
18 | BCL11A | chr22:20361230-20361825 | GM12878 | blood: | n/a | n/a |
19 | BCL11A | chr22:20460690-20460996 | GM12878 | blood: | n/a | n/a |
20 | BCL11A | chr22:20424439-20424711 | GM12878 | blood: | n/a | n/a |
21 | BCL11A | chr22:20360094-20360447 | GM12878 | blood: | n/a | n/a |
22 | BHLHE40 | chr22:20428314-20428573 | HepG2 | liver: | n/a | n/a |
23 | BHLHE40 | chr22:20420653-20421045 | HepG2 | liver: | n/a | chr22:20420721-20420737 |
24 | BHLHE40 | chr22:20460604-20460954 | HepG2 | liver: | n/a | n/a |
25 | BHLHE40 | chr22:20378358-20378553 | HepG2 | liver: | n/a | n/a |
26 | BHLHE40 | chr22:20348087-20348416 | HepG2 | liver: | n/a | n/a |
27 | BHLHE40 | chr22:20362183-20362654 | HepG2 | liver: | n/a | n/a |
28 | BHLHE40 | chr22:20436958-20437296 | HepG2 | liver: | n/a | n/a |
29 | BHLHE40 | chr22:20378988-20379084 | GM12878 | blood: | n/a | n/a |
30 | BHLHE40 | chr22:20445081-20445367 | HepG2 | liver: | n/a | n/a |
31 | CBX3 | chr22:20377744-20379764 | K562 | blood: | n/a | n/a |
32 | CBX3 | chr22:20441631-20442615 | K562 | blood: | n/a | n/a |
33 | CBX3 | chr22:20454740-20456344 | K562 | blood: | n/a | n/a |
34 | CBX3 | chr22:20460679-20461023 | K562 | blood: | n/a | n/a |
35 | CBX3 | chr22:20450575-20451117 | K562 | blood: | n/a | n/a |
36 | CBX3 | chr22:20423295-20424707 | K562 | blood: | n/a | n/a |
37 | CBX3 | chr22:20459968-20461115 | K562 | blood: | n/a | n/a |
38 | CBX3 | chr22:20424749-20427337 | K562 | blood: | n/a | n/a |
39 | CBX3 | chr22:20420272-20421095 | K562 | blood: | n/a | n/a |
40 | CBX3 | chr22:20444910-20445645 | K562 | blood: | n/a | n/a |
41 | CBX3 | chr22:20408901-20410101 | K562 | blood: | n/a | n/a |
42 | CBX3 | chr22:20420629-20421065 | K562 | blood: | n/a | n/a |
43 | CEBPB | chr22:20445369-20445569 | K562 | blood: | n/a | n/a |
44 | CEBPB | chr22:20447394-20447719 | K562 | blood: | n/a | n/a |
45 | CEBPB | chr22:20427068-20427414 | K562 | blood: | n/a | n/a |
46 | CEBPB | chr22:20437060-20437626 | K562 | blood: | n/a | n/a |
47 | CEBPB | chr22:20428597-20429008 | K562 | blood: | n/a | n/a |
48 | CEBPB | chr22:20428730-20428899 | K562 | blood: | n/a | n/a |
49 | CEBPB | chr22:20437259-20437596 | K562 | blood: | n/a | n/a |
50 | CEBPB | chr22:20462825-20463220 | K562 | blood: | n/a | n/a |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr22:20481341-20481391 | HCM | heart: | n/a |
2 | chr22:20464947-20464997 | ovcar-3 | ovarian: | n/a |
3 | chr22:20483668-20483718 | SK-N-SH_RA | brain: | n/a |
4 | chr22:20484804-20484854 | HRCEpiC | kidney: | n/a |
5 | chr22:20502597-20502647 | HepG2 | liver: | n/a |
6 | chr22:20428109-20428159 | HAEpiC | amniotic membrane: | n/a |
7 | chr22:20423500-20423550 | SKMC | muscle: | n/a |
8 | chr22:20381640-20381690 | Hepatocyte | liver: | n/a |
9 | chr22:20399974-20400024 | AG09309 | skin: | n/a |
10 | chr22:20457884-20457934 | SK-N-SH | brain: | n/a |
11 | chr22:20456706-20456756 | NT2-D1 | testis: | n/a |
12 | chr22:20432168-20432218 | HCF | heart: | n/a |
13 | chr22:20456706-20456756 | K562 | blood: | n/a |
14 | chr22:20485872-20485922 | BJ | skin: | n/a |
15 | chr22:20432168-20432218 | AG04449 | skin: | fetal |
16 | chr22:20456706-20456756 | A549 | lung: | n/a |
17 | chr22:20381640-20381690 | AG10803 | skin: | n/a |
18 | chr22:20462514-20462564 | Hela-S3 | cervix: | n/a |
19 | chr22:20376405-20376455 | HRPEpiC | eye: | n/a |
20 | chr22:20423500-20423550 | Hepatocyte | liver: | n/a |
21 | chr22:20456706-20456756 | ECC-1 | luminal epithelium: | n/a |
22 | chr22:20378953-20379003 | MCF10A-Er-Src | breast: | n/a |
23 | chr22:20423500-20423550 | ProgFib | skin: | n/a |
24 | chr22:20376405-20376455 | IMR90 | lung: | fetal |
25 | chr22:20484804-20484854 | IMR90 | lung: | fetal |
26 | chr22:20456706-20456756 | HCM | heart: | n/a |
27 | chr22:20504411-20504461 | PrEC | prostate: | n/a |
28 | chr22:20456706-20456756 | SKMC | muscle: | n/a |
29 | chr22:20428109-20428159 | PFSK-1 | brain: | n/a |
30 | chr22:20485872-20485922 | GM12892 | blood: | n/a |
31 | chr22:20376405-20376455 | HepG2 | liver: | n/a |
32 | chr22:20376405-20376455 | SK-N-MC | brain: | n/a |
33 | chr22:20428109-20428159 | T-47D | breast: | n/a |
34 | chr22:20502597-20502647 | LNCaP | prostate: | n/a |
35 | chr22:20456706-20456756 | BJ | skin: | n/a |
36 | chr22:20384320-20384370 | SK-N-MC | brain: | n/a |
37 | chr22:20378953-20379003 | NT2-D1 | testis: | n/a |
38 | chr22:20428109-20428159 | GM12878 | blood: | n/a |
39 | chr22:20457884-20457934 | HCF | heart: | n/a |
40 | chr22:20428109-20428159 | HEEpiC | esophagus: | n/a |
41 | chr22:20381640-20381690 | PANC-1 | pancreas: | n/a |
42 | chr22:20460068-20460118 | AG09319 | gingival: | n/a |
43 | chr22:20400015-20400065 | ProgFib | skin: | n/a |
44 | chr22:20384320-20384370 | Hela-S3 | cervix: | n/a |
45 | chr22:20378953-20379003 | HCF | heart: | n/a |
46 | chr22:20502597-20502647 | Caco-2 | colon: | n/a |
47 | chr22:20432168-20432218 | H1-hESC | embryonic stem cell: | embryo |
48 | chr22:20378953-20379003 | HRCEpiC | kidney: | n/a |
49 | chr22:20484804-20484854 | HAEpiC | amniotic membrane: | n/a |
50 | chr22:20399601-20399651 | AoSMC | blood vessel: | n/a |
(count:1 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr22:20378583..20380116-chr22:21982503..21985257,2 | K562 | blood: |
(count:4 , 50 per page) page:
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No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-RIMBP3-1 | chr22:20455669-20455969 | NONHSAT083514 |
2 | lnc-AC007663.1-5 | chr22:20401139-20401184 | XLOC_014158 |
3 | lnc-AC007663.1-5 | chr22:20404157-20404240 | XLOC_014158 |
4 | lnc-AC007663.1-5 | chr22:20420432-20420591 | XLOC_014158 |
No data |
No data |
Variant related genes | Relation type |
---|---|
CA15P2 | TF binding region |
ENSG00000235704 | TF binding region |
ENSG00000206176 | TF binding region |
ENSG00000252024 | TF binding region |
ENSG00000236984 | TF binding region |
GGTLC3 | TF binding region |
RIMBP3 | TF binding region |
PPP1R26P2 | TF binding region |
ENSG00000271796 | TF binding region |
PI4KAP1 | TF binding region |
ENSG00000252571 | TF binding region |
RN7SKP131 | TF binding region |
CA15P2 | CpG island |
ENSG00000235704 | CpG island |
ENSG00000206176 | CpG island |
ENSG00000252024 | CpG island |
ENSG00000236984 | CpG island |
GGTLC3 | CpG island |
RIMBP3 | CpG island |
PPP1R26P2 | CpG island |
ENSG00000271796 | CpG island |
PI4KAP1 | CpG island |
ENSG00000252571 | CpG island |
RN7SKP131 | CpG island |
ENSG00000161179 | chromatin interactions |
E2F1 | miRNA target sites |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs62218631 | chr22:20360628-20360629 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
2 | rs3962691 | chr22:20360856-20360857 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
3 | rs143901841 | chr22:20360881-20360882 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
4 | rs189812639 | chr22:20360886-20360887 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
5 | rs556586210 | chr22:20360928-20360929 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
6 | rs376954454 | chr22:20360957-20360958 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
7 | rs11486545 | chr22:20360962-20360963 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
8 | rs576544144 | chr22:20360974-20360975 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
9 | rs542077500 | chr22:20361004-20361005 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
10 | rs561971645 | chr22:20361043-20361044 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
11 | rs371233296 | chr22:20361056-20361057 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
12 | rs375531041 | chr22:20361061-20361062 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
13 | rs527762918 | chr22:20361065-20361066 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
14 | rs541167452 | chr22:20361073-20361074 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
15 | rs564137156 | chr22:20361150-20361151 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
16 | rs182023275 | chr22:20361182-20361183 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
17 | rs547747877 | chr22:20361211-20361212 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
18 | rs140729056 | chr22:20361223-20361224 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
19 | rs112091896 | chr22:20361254-20361255 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
20 | rs375581849 | chr22:20361255-20361256 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
21 | rs184623332 | chr22:20361277-20361278 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
22 | rs548391365 | chr22:20361299-20361300 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
23 | rs565365962 | chr22:20361300-20361301 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
24 | rs368103970 | chr22:20361313-20361314 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
25 | rs517083 | chr22:20361315-20361316 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
26 | rs568304563 | chr22:20361317-20361318 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
27 | rs373452109 | chr22:20361362-20361363 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
28 | rs116539977 | chr22:20361375-20361376 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
29 | rs200608091 | chr22:20361376-20361377 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
30 | rs184989769 | chr22:20361394-20361395 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
31 | rs112581511 | chr22:20361402-20361403 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
32 | rs570383456 | chr22:20361411-20361412 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
33 | rs539075738 | chr22:20361417-20361418 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
34 | rs375099773 | chr22:20361421-20361422 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
35 | rs556786851 | chr22:20361439-20361440 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
36 | rs369169932 | chr22:20361442-20361443 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
37 | rs576637632 | chr22:20361443-20361444 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
38 | rs542543351 | chr22:20361455-20361456 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
39 | rs144814385 | chr22:20361459-20361460 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
40 | rs200181828 | chr22:20361475-20361476 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
41 | rs149025728 | chr22:20361481-20361482 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
42 | rs555531018 | chr22:20361489-20361490 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
43 | rs375883502 | chr22:20361494-20361495 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
44 | rs572351055 | chr22:20361501-20361502 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
45 | rs370788417 | chr22:20361518-20361519 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
46 | rs541085771 | chr22:20361524-20361525 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
47 | rs139043741 | chr22:20361605-20361606 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
48 | rs140439240 | chr22:20361621-20361622 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
49 | rs202219541 | chr22:20361622-20361623 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
50 | rs543431661 | chr22:20361646-20361647 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Hodgkin''s lymphoma | 18641027 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Velocardiofacial syndrome | 20111667 | CNVD |
Medulloblastoma | 21979893 | CNVD |
sporadic solitary meningiomas | 19589153 | CNVD |
Myofibroblastic sarcoma | 19369631 | CNVD |
Autism | 22102821 | CNVD |
Autism | 22495311 | CNVD |
Lung cancer | 18438408 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Emanuel syndrome | 21549014 | CNVD |
Digeorge syndrome | 22283845 | CNVD |
Schizophrenia | 17504246 | CNVD |
Digeorge syndrome | 18033723 | CNVD |
22q11 deletion syndrome | 17034021 | CNVD |
22q11 deletion syndrome | 22511897 | CNVD |
22q11 deletion syndrome | 16829213 | CNVD |
Autism | 22067053 | CNVD |
Autism | 19218893 | CNVD |
Biliary cancer | 22067053 | CNVD |
Congenital heart defect | 21390462 | CNVD |
Digeorge syndrome | 16617304 | CNVD |
Emanuel syndrome | 18184694 | CNVD |
Non-syndromic sensorineural hearing loss | 18184694 | CNVD |
Obsessive-compulsive disorder | 22067053 | CNVD |
Psychosis | 22067053 | CNVD |
Schizophrenia | 19415332 | CNVD |
Schizophrenia | 20587603 | CNVD |
Shprintzen syndrome | 19443537 | CNVD |
absent pulmonary valve syndrome | 16795129 | CNVD |
language delay | 22067053 | CNVD |
periventricular nodular heterotopia | 20648244 | CNVD |
renal disease | 17924346 | CNVD |
Schizophrenia | 20433910 | CNVD |
22q11 deletion syndrome | 17028864 | CNVD |
Schizophrenia | 16969581 | CNVD |
Non-syndromic sensorineural hearing loss | 17135275 | CNVD |
velo-cardio-facial syndrome | 17135275 | CNVD |
Digeorge syndrome | 18787571 | CNVD |
Autism | 18925931 | CNVD |
Non-small cell lung cancer | 21829676 | CNVD |
22q11.2 microdeletion syndrome | 21547621 | CNVD |
Congenital heart defect | 21308838 | CNVD |
Digeorge syndrome | 16512914 | CNVD |
Digeorge syndrome | 20954168 | CNVD |
Nuchal translucency | 21837766 | CNVD |
Right aortic arch in the fetus | 17066500 | CNVD |
Shprintzen syndrome | 17117043 | CNVD |
Tetralogy of fallot | 17405110 | CNVD |
Velocardiofacial syndrome | 20140301 | CNVD |
Velocardiofacial syndrome | 16512914 | CNVD |
bone mass and metabolism | 20516202 | CNVD |
choanal atresia | 18209138 | CNVD |
extracardiac malformations | 17086578 | CNVD |
fetal heart defects | 21308838 | CNVD |
parathyroid gland dysfunction | 16793949 | CNVD |
prenatal diagnosis | 20453657 | CNVD |
velopharyngeal insufficiency | 19620585 | CNVD |
Prader-willi syndrome | 20942916 | CNVD |
22q11 deletion syndrome | 17653112 | CNVD |
Chronic myelomonocytic leukemia | 16760666 | CNVD |
Non-syndromic sensorineural hearing loss | 16829213 | CNVD |
Non-syndromic sensorineural hearing loss | 16760666 | CNVD |
Chordoma | 21602918 | CNVD |
Cancer | 21637783 | CNVD |
Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
Splenic marginal zone lymphoma | 21957467 | CNVD |
Congenital heart defect | 22511896 | CNVD |
Breast cancer | 17603634 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Burkitt''s lymphoma | 18698080 | CNVD |
Acute myeloid leukemia | 16864856 | CNVD |
Astrocytoma | 17387387 | CNVD |
Breast cancer | 21264507 | CNVD |
Glioblastoma multiforme | 17387387 | CNVD |
Seminomas | 18059402 | CNVD |
Cancer | 16751803 | CNVD |
Metanephric adenoma | 20802469 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Acute lymphoblastic leukemia | 19100363 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Metachromatic leukodystrophy | 18421352 | CNVD |
Basal cell lymphoma | 17170743 | CNVD |
Gastrointestinal stromal cancer | 19259404 | CNVD |
Gastrointestinal stromal cancer | 20470368 | CNVD |
Gastrointestinal stromal cancer | 17535989 | CNVD |
Paraganglioma | 17535989 | CNVD |
Pulmonary chondroma | 17535989 | CNVD |
Breast cancer | 17142309 | CNVD |
Acute lymphoblastic leukemia | 21248843 | CNVD |
Breast cancer | 21858162 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Myelodysplastic syndrome | 21251322 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
Breast cancer | 21509527 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Prostate cancer | 18632612 | CNVD |
Gastric cancer | 22591714 | CNVD |
Autism | 22958593 | CNVD |
Digeorge syndrome | 16199537 | CNVD |
Schizophrenia | 22958593 | CNVD |
Schizophrenia | 21285140 | CNVD |
Schizophrenia | 22241247 | CNVD |
Autism | 22241247 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Glioblastoma multiforme | 18628472 | CNVD |
Glioblastoma multiforme | 22286061 | CNVD |
Ovarian neoplasms | 16753589 | CNVD |
Schizophrenia | 21399695 | CNVD |
22q11.21 microdeletion syndrome | 19193630 | CNVD |
Cat eye syndrome | 21549014 | CNVD |
Digeorge syndrome | 21549014 | CNVD |
22q11.2 microdeletion syndrome | 22051516 | CNVD |
22q11.2 microdeletion syndrome | 18483005 | CNVD |
22q11.2 microdeletion syndrome | 19565140 | CNVD |
22q11.2 microdeletion syndrome | 20396437 | CNVD |
22q11.2 microdeletion syndrome | 21390462 | CNVD |
22q11.2 microdeletion syndrome | 21573985 | CNVD |
Austim spectrum disorder | 21302340 | CNVD |
Autism | 20970697 | CNVD |
Bipolar disorder | 19114987 | CNVD |
Congenital heart defect | 21257016 | CNVD |
Developmental delay | 18414209 | CNVD |
DiGeorge-Velo cardiofacial | 19284877 | CNVD |
Epilepsy | 20970697 | CNVD |
Heart disease | 20551144 | CNVD |
Hughes'' syndrome | 16595601 | CNVD |
Mental retardation | 18414209 | CNVD |
Okamoto syndrome | 19046188 | CNVD |
Primary immunodeficiency | 22566803 | CNVD |
Schizophrenia | 20877625 | CNVD |
Schizophrenia | 20553308 | CNVD |
Schizophrenia | 21956041 | CNVD |
Schizophrenia | 20970697 | CNVD |
Tetralogy of Fallot | 22912587 | CNVD |
Velocardiofacial syndrome | 17556857 | CNVD |
Velocardiofacial syndrome | 20206275 | CNVD |
Velocardiofacial syndrome | 20970697 | CNVD |
delayed speech development | 21274400 | CNVD |
velo-cardio-facial syndrome | 16511839 | CNVD |
velo-cardio-facial syndrome | 21763005 | CNVD |
22q11.2 microdeletion syndrome | 18799940 | CNVD |
Digeorge syndrome | 20877625 | CNVD |
22q11.2 microdeletion syndrome | 18923514 | CNVD |
Congenital heart defect | 22185286 | CNVD |
DiGeorge-Velo cardiofacial | 16773131 | CNVD |
Digeorge syndrome | 20186050 | CNVD |
velo-cardio-facial conotruncal-face syndrome | 20186050 | CNVD |
22q11.2 microdeletion syndrome | 22116936 | CNVD |
Disorders of sex development | 22290220 | CNVD |
22q11.2 duplication syndrome | 18923514 | CNVD |
Autism | 22095694 | CNVD |
Mental retardation | 19951919 | CNVD |
Honadal dysgenesis | 21048976 | CNVD |
Mental retardation | 16773131 | CNVD |
22q11.2 microdeletion syndrome | 22395003 | CNVD |
22q11.2 microdeletion syndrome | 18691436 | CNVD |
22q11.2 microdeletion syndrome | 18053182 | CNVD |
22q11.2 microdeletion syndrome | 18324686 | CNVD |
22q11.2 microdeletion syndrome | 20074913 | CNVD |
Congenital heart defect | 20802965 | CNVD |
Congenital heart defect | 21134246 | CNVD |
DiGeorge syndrome | 19040613 | CNVD |
DiGeorge-Velo cardiofacial | 18179902 | CNVD |
Digeorge syndrome | 18172682 | CNVD |
Digeorge syndrome | 22470819 | CNVD |
Digeorge syndrome | 21364285 | CNVD |
Neuroendocrine carcinoma | 22470819 | CNVD |
Non-syndromic sensorineural hearing loss | 20069674 | CNVD |
Smith-Magenis syndrome | 18301319 | CNVD |
Tetralogy of fallot | 19144126 | CNVD |
Velo-cardio-facial syndrome | 21364285 | CNVD |
Velocardiofacial syndrome | 18788013 | CNVD |
cardiac malformation | 20573211 | CNVD |
cardiac malformation | 18172682 | CNVD |
velo-cardio-facial syndrome | 18636631 | CNVD |
Schizophrenia | 21822266 | CNVD |
synaptic plasticity | 21368174 | CNVD |
Schizophrenia | 18043741 | CNVD |
sporadic birth defects | 19047251 | CNVD |
Autism | 19046189 | CNVD |
DiGeorge-Velo cardiofacial | 19047251 | CNVD |
Hypernasal speech | 21968682 | CNVD |
Mental retardation | 17339581 | CNVD |
diverse phenotype | 16760730 | CNVD |
Mental retardation | 20152051 | CNVD |
Breast cancer | 16608533 | CNVD |
Melanoma | 18172304 | CNVD |
Ovarian cancer | 22174824 | CNVD |
T-cell prolymphocytic leukemia | 17713554 | CNVD |
Wilms tumour | 21544195 | CNVD |
Acute myeloid leukemia | 21251322 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Autism | 19521722 | CNVD |
Digeorge syndrome | 19521722 | CNVD |
Autism | 19955444 | CNVD |
Schizophrenia | 19955444 | CNVD |
Mental retardation | 17124404 | CNVD |
Tourette syndrome | 20069037 | CNVD |
Williams-beuren syndrome | 18553513 | CNVD |
Emphysema | 19352772 | CNVD |
Schizophrenia | 17160897 | CNVD |
Cancer | 17160897 | CNVD |
Neuropsychiatric disorder | 20069037 | CNVD |
DiGeorge-Velo cardiofacial | 17597781 | CNVD |
Digeorge syndrome | 17576883 | CNVD |
Schizophrenia | 18806272 | CNVD |
Schizophrenia | 18990708 | CNVD |
Velocardiofacial syndrome | 17576883 | CNVD |
Schizophrenia | 20075378 | CNVD |
Neurodevelopmental disorder | 17015230 | CNVD |
Cancer | 17440070 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Esophageal cancer | 21851588 | CNVD |
22q11.2 deletion syndrome | 22563040 | CNVD |
cardiac septal defect | 19239688 | CNVD |
Disease | 21346257 | CNVD |
Breast cancer | 20668451 | CNVD |
Cancer | 20668451 | CNVD |
Lung cancer | 20668451 | CNVD |
Ovarian cancer | 20668451 | CNVD |
Pancreas cancer | 20668451 | CNVD |
Prostate cancer | 20668451 | CNVD |
Urothelial carcinoma | 21177765 | CNVD |
Developmental delay | 21147756 | CNVD |
Non-syndromic sensorineural hearing loss | 21293372 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
Breast cancer | 22522925 | CNVD |
Cancer | 20164919 | CNVD |
Type 2 diabetes | 21526130 | CNVD |
Ependymoma | 20639864 | CNVD |
Lung adenocarcinoma | 21935476 | CNVD |
Non-syndromic sensorineural hearing loss | 18451855 | CNVD |
Neuroblastoma | 18923191 | CNVD |
Prader-willi syndrome | 20588305 | CNVD |
T-cell acute lymphoblastic leukemia | 21980252 | CNVD |
22q11.22 microdeletion syndrome | 19193630 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr22:20360600-20361800 | Enhancers | Fetal Muscle Trunk | muscle |
2 | chr22:20365600-20365800 | Enhancers | HUES6 Cell Line | embryonic stem cell |
3 | chr22:20377000-20377200 | Enhancers | iPS-18 Cell Line | embryonic stem cell |
4 | chr22:20377000-20377200 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
5 | chr22:20377000-20377400 | Enhancers | Dnd41 | blood |
6 | chr22:20377400-20378000 | Weak transcription | Dnd41 | blood |
7 | chr22:20378000-20378600 | Active TSS | Breast Myoepithelial Primary Cells | Breast |
8 | chr22:20378000-20378600 | Active TSS | Primary hematopoietic stem cells short term culture | blood |
9 | chr22:20378000-20379000 | Active TSS | iPS-18 Cell Line | embryonic stem cell |
10 | chr22:20378000-20379000 | Active TSS | Primary monocytes fromperipheralblood | blood |
11 | chr22:20378000-20379000 | Active TSS | Primary B cells from peripheral blood | blood |
12 | chr22:20378000-20379000 | Active TSS | Primary T cells fromperipheralblood | blood |
13 | chr22:20378000-20379000 | Active TSS | Primary Natural Killer cells fromperipheralblood | blood |
14 | chr22:20378000-20379000 | Active TSS | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
15 | chr22:20378000-20379000 | Active TSS | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
16 | chr22:20378000-20379000 | Active TSS | Fetal Adrenal Gland | Adrenal Gland |
17 | chr22:20378000-20379000 | Active TSS | Fetal Stomach | stomach |
18 | chr22:20378000-20379000 | Active TSS | Fetal Thymus | thymus |
19 | chr22:20378000-20379000 | Active TSS | Dnd41 | blood |
20 | chr22:20378000-20379000 | Active TSS | HepG2 | liver |
21 | chr22:20378000-20379000 | Active TSS | HMEC | breast |
22 | chr22:20378000-20379200 | Active TSS | Brain Germinal Matrix | brain |
23 | chr22:20378000-20379800 | Active TSS | Foreskin Melanocyte Primary Cells skin03 | Skin |
24 | chr22:20378000-20380000 | Active TSS | Foreskin Keratinocyte Primary Cells skin03 | Skin |
25 | chr22:20378200-20378600 | Active TSS | Primary mononuclear cells fromperipheralblood | Blood |
26 | chr22:20378200-20378800 | Active TSS | Fetal Muscle Leg | muscle |
27 | chr22:20378200-20379000 | Active TSS | Primary T helper cells fromperipheralblood | blood |
28 | chr22:20378200-20379000 | Active TSS | Fetal Intestine Large | intestine |
29 | chr22:20378200-20379000 | Active TSS | HSMM | muscle |
30 | chr22:20378400-20378800 | Active TSS | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
31 | chr22:20378400-20378800 | Active TSS | Primary T helper 17 cells PMA-I stimulated | -- |
32 | chr22:20378400-20378800 | Active TSS | Ovary | ovary |
33 | chr22:20378400-20378800 | Active TSS | HSMMtube | muscle |
34 | chr22:20378400-20379000 | Active TSS | H9 Cell Line | embryonic stem cell |
35 | chr22:20378400-20379000 | Active TSS | HUES48 Cell Line | embryonic stem cell |
36 | chr22:20378400-20379000 | Active TSS | HUES6 Cell Line | embryonic stem cell |
37 | chr22:20378400-20379000 | Active TSS | HUES64 Cell Line | embryonic stem cell |
38 | chr22:20378400-20379000 | Active TSS | IMR90 fetal lung fibroblasts Cell Line | lung |
39 | chr22:20378400-20379000 | Active TSS | iPS-20b Cell Line | embryonic stem cell |
40 | chr22:20378400-20379000 | Active TSS | Primary T helper memory cells from peripheral blood 2 | blood |
41 | chr22:20378400-20379000 | Active TSS | Primary T helper naive cells fromperipheralblood | blood |
42 | chr22:20378400-20379000 | Active TSS | Primary T helper cells PMA-I stimulated | -- |
43 | chr22:20378400-20379000 | Active TSS | Primary T killer naive cells fromperipheralblood | blood |
44 | chr22:20378400-20379000 | Active TSS | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
45 | chr22:20378400-20379000 | Active TSS | Adipose Nuclei | Adipose |
46 | chr22:20378400-20379000 | Active TSS | Brain Cingulate Gyrus | brain |
47 | chr22:20378400-20379000 | Active TSS | Brain Hippocampus Middle | brain |
48 | chr22:20378400-20379000 | Active TSS | Colon Smooth Muscle | Colon |
49 | chr22:20378400-20379000 | Active TSS | Duodenum Smooth Muscle | Duodenum |
50 | chr22:20378400-20379000 | Active TSS | Right Atrium | heart |