Variant report
| Variant | esv3457501 |
|---|---|
| Chromosome Location | chr2:34797610-34801596 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:2)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:2 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-RASGRP3-14 | chr2:34800570-34801134 | NONHSAT070037 |
| 2 | lnc-RASGRP3-14 | chr2:34800570-34803561 | l_1807_chr2:34789043-34803561_liver |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs144658180 | chr2:34800626-34800627 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 2 | rs191012932 | chr2:34800627-34800628 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 3 | rs550524778 | chr2:34800630-34800631 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 4 | rs181007632 | chr2:34800633-34800634 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 5 | rs539245609 | chr2:34800651-34800652 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 6 | rs199620558 | chr2:34800877-34800878 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 7 | rs1220229 | chr2:34800934-34800935 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 8 | rs372865188 | chr2:34800967-34800968 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 9 | rs566406748 | chr2:34800978-34800979 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 10 | rs535114066 | chr2:34801005-34801006 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 11 | rs574674735 | chr2:34801007-34801008 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 12 | rs200166089 | chr2:34801018-34801019 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 13 | rs575263179 | chr2:34801038-34801039 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 14 | rs141110069 | chr2:34801100-34801101 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 15 | rs554170339 | chr2:34801229-34801230 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 16 | rs370805067 | chr2:34801309-34801310 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 17 | rs537897185 | chr2:34801469-34801470 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 18 | rs557280164 | chr2:34801475-34801476 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 19 | rs577409923 | chr2:34801519-34801520 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 20 | rs546419189 | chr2:34801553-34801554 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 21 | rs374887657 | chr2:34801565-34801566 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 22 | rs397746972 | chr2:34801583-34801584 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:60)
| Disease | PMID | Source |
|---|---|---|
| Breast cancer | 17393978 | CNVD |
| Acute lymphoblastic leukemia | 21098271 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Lynch syndrome | 18415027 | CNVD |
| Basal cell lymphoma | 16317097 | CNVD |
| Diffuse large b-cell lymphoma | 16317097 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Diffuse large b-cell lymphoma | 18287131 | CNVD |
| Ovarian neoplasms | 16753589 | CNVD |
| Glioblastoma multiforme | 17387387 | CNVD |
| Neuroblastoma | 17533364 | CNVD |
| Neuroblastoma | 18923191 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Adrenal tumor | 17535989 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Basal cell lymphoma | 17053054 | CNVD |
| Medulloblastoma | 17522785 | CNVD |
| Cancer | 23418310 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Ependymoma | 16718352 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| lymphocytic leukemia | 21291569 | CNVD |
| Prostate cancer | 18632612 | CNVD |
| Bladder cancer | 21909424 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Intellectual disability | 22102821 | CNVD |
| Cancer | 20164919 | CNVD |
| Hodgkin''s lymphoma | 18641027 | CNVD |
| Autism | 22495311 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| Follicular lymphoma | 20505157 | CNVD |
| Autism | 17483303 | CNVD |
| Invasive pancreatic ductal carcinoma | 16982739 | CNVD |
| Myofibroblastic sarcoma | 19369631 | CNVD |
| Esophageal adenocarcinoma | 18519675 | CNVD |
| Medulloblastoma | 20607354 | CNVD |
| Leukemia | 18628472 | CNVD |
| Autism | 19521722 | CNVD |
| Autism | 18522746 | CNVD |
| Breast cancer | 21364760 | CNVD |
| Wilms tumour | 21544195 | CNVD |
| Non-small cell lung cancer | 18927303 | CNVD |
| Hereditary gingival fibromatosis | 19633868 | CNVD |
| Breast cancer | 21785460 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Breast cancer | 21045282 | CNVD |
| Prostate cancer | 21965145 | CNVD |
| Breast cancer | 16397240 | CNVD |
| Acute lymphoblastic leukemia | 21390130 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Neuroblastoma | 21508638 | CNVD |
| Neurodevelopmental disorder | 22521361 | CNVD |
| Neurocytoma | 17123091 | CNVD |
| Autism | 22495309 | CNVD |
| Pancreatic ductal adenocarcinoma | 19077451 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
Chromatin state (count:0 , 50 per page) page:
| No data |
