Variant report

Variant	esv3461090
Chromosome Location	chr3:53078737-53081285
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:657)
CpG islands
(count:366)
Chromatin interactive
region (count:5)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:657 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr3:53079923-53080078	HepG2	liver:	n/a	n/a
2	ATF2	chr3:53080620-53080928	GM12878	blood:	n/a	n/a
3	ATF2	chr3:53080591-53080904	H1-hESC	embryonic stem cell:	n/a	n/a
4	BACH1	chr3:53078839-53078970	H1-hESC	embryonic stem cell:	n/a	n/a
5	BACH1	chr3:53079417-53081172	H1-hESC	embryonic stem cell:	n/a	n/a
6	BCLAF1	chr3:53080452-53080983	GM12878	blood:	n/a	n/a
7	BCLAF1	chr3:53079955-53080354	GM12878	blood:	n/a	n/a
8	BCLAF1	chr3:53078329-53079258	GM12878	blood:	n/a	n/a
9	BHLHE40	chr3:53080387-53080740	A549	lung:	n/a	n/a
10	BHLHE40	chr3:53079792-53080082	K562	blood:	n/a	n/a
11	BHLHE40	chr3:53080388-53080805	K562	blood:	n/a	n/a
12	BHLHE40	chr3:53079770-53081260	GM12878	blood:	n/a	n/a
13	CCNT2	chr3:53079023-53080645	K562	blood:	n/a	chr3:53080122-53080131
14	CEBPD	chr3:53079891-53080235	HepG2	liver:	n/a	n/a
15	CEBPD	chr3:53079153-53079403	HepG2	liver:	n/a	n/a
16	CHD1	chr3:53080449-53080979	GM12878	blood:	n/a	n/a
17	CHD1	chr3:53079000-53079253	GM12878	blood:	n/a	n/a
18	CHD1	chr3:53079807-53080192	GM12878	blood:	n/a	chr3:53080160-53080170
19	CHD1	chr3:53080619-53080659	H1-hESC	embryonic stem cell:	n/a	n/a
20	CHD2	chr3:53080493-53080969	H1-hESC	embryonic stem cell:	n/a	n/a
21	CHD2	chr3:53079835-53080238	K562	blood:	n/a	chr3:53080160-53080170
22	CHD2	chr3:53079452-53079597	Hela-S3	cervix:	n/a	n/a
23	CHD2	chr3:53080423-53081123	GM12878	blood:	n/a	n/a
24	CHD2	chr3:53079844-53080219	Hela-S3	cervix:	n/a	chr3:53080160-53080170
25	CHD2	chr3:53079807-53080211	GM12878	blood:	n/a	chr3:53080160-53080170
26	CREB1	chr3:53079985-53080258	A549	lung:	n/a	n/a
27	CREB1	chr3:53079608-53080444	HepG2	liver:	n/a	n/a
28	CREB1	chr3:53079009-53079348	A549	lung:	n/a	n/a
29	CREB1	chr3:53080497-53081113	A549	lung:	n/a	n/a
30	CTBP2	chr3:53080311-53081173	H1-hESC	embryonic stem cell:	n/a	n/a
31	CTCF	chr3:53080620-53080770	SAEC	small airway:	n/a	n/a
32	CTCF	chr3:53079449-53079541	MCF-7	breast:	n/a	n/a
33	CTCF	chr3:53080617-53080906	GM13976	blood:	n/a	n/a
34	CTCF	chr3:53080680-53080830	GM12872	blood:	n/a	n/a
35	CTCF	chr3:53080600-53080750	HCT-116	colon:	n/a	n/a
36	CTCF	chr3:53079442-53079552	GM10266	blood:	n/a	n/a
37	CTCF	chr3:53080660-53080810	GM12867	blood:	n/a	n/a
38	CTCF	chr3:53080680-53080830	Caco-2	colon:	n/a	n/a
39	CTCF	chr3:53078780-53078930	HBMEC	blood vessel:	n/a	n/a
40	CTCF	chr3:53079473-53079541	GM13976	blood:	n/a	n/a
41	CTCF	chr3:53079407-53079580	GM19239	blood:	n/a	n/a
42	CTCF	chr3:53080700-53080850	HRE	kidney:	n/a	n/a
43	CTCF	chr3:53079449-53079545	H1-hESC	embryonic stem cell:	n/a	n/a
44	CTCF	chr3:53080027-53080197	Spleen_OC	spleen:	n/a	n/a
45	CTCF	chr3:53080680-53080830	AG09319	gingival:	n/a	n/a
46	CTCF	chr3:53079818-53081118	SK-N-SH	brain:	n/a	n/a
47	CTCF	chr3:53080494-53081168	GM12878	blood:	n/a	n/a
48	CTCF	chr3:53081024-53081145	MCF-7	breast:	n/a	n/a
49	CTCF	chr3:53080660-53080810	AG09309	skin:	n/a	n/a
50	CTCF	chr3:53080700-53080850	RPTEC	kidney:	n/a	n/a

(count:366 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:53080176-53080226	HCT-116	colon:	n/a
2	chr3:53080682-53080732	U87	brain:	n/a
3	chr3:53080682-53080732	GM06990	blood:	n/a
4	chr3:53080682-53080732	HCT-116	colon:	n/a
5	chr3:53079796-53079846	GM12891	blood:	n/a
6	chr3:53079796-53079846	HIPEpiC	eye:	n/a
7	chr3:53079105-53079155	HIPEpiC	eye:	n/a
8	chr3:53078990-53079040	NHDF-neo	bronchial:	n/a
9	chr3:53078990-53079040	HIPEpiC	eye:	n/a
10	chr3:53080682-53080732	HMEC	breast:	n/a
11	chr3:53079796-53079846	SK-N-SH	brain:	n/a
12	chr3:53078990-53079040	HCPEpiC	choroid plexus:	n/a
13	chr3:53080176-53080226	U87	brain:	n/a
14	chr3:53080682-53080732	HUVEC	blood vessel:	n/a
15	chr3:53080682-53080732	NHDF-neo	bronchial:	n/a
16	chr3:53080176-53080226	CMK	blood:	n/a
17	chr3:53079105-53079155	HNPCEpiC	eye:	n/a
18	chr3:53080682-53080732	Caco-2	colon:	n/a
19	chr3:53080440-53080490	K562	blood:	n/a
20	chr3:53080176-53080226	ProgFib	skin:	n/a
21	chr3:53078990-53079040	BE2_C	brain:	n/a
22	chr3:53078990-53079040	CMK	blood:	n/a
23	chr3:53079105-53079155	AoSMC	blood vessel:	n/a
24	chr3:53079105-53079155	HMEC	breast:	n/a
25	chr3:53080440-53080490	SKMC	muscle:	n/a
26	chr3:53079796-53079846	NT2-D1	testis:	n/a
27	chr3:53080440-53080490	HCF	heart:	n/a
28	chr3:53078990-53079040	HEK293	kidney:	embryo
29	chr3:53078990-53079040	MCF-7	breast:	n/a
30	chr3:53080440-53080490	NHBE	bronchial:	n/a
31	chr3:53078990-53079040	SK-N-SH_RA	brain:	n/a
32	chr3:53080682-53080732	SAEC	small airway:	n/a
33	chr3:53080176-53080226	PFSK-1	brain:	n/a
34	chr3:53079796-53079846	CMK	blood:	n/a
35	chr3:53079105-53079155	IMR90	lung:	fetal
36	chr3:53080176-53080226	GM06990	blood:	n/a
37	chr3:53079105-53079155	AG10803	skin:	n/a
38	chr3:53079796-53079846	AoSMC	blood vessel:	n/a
39	chr3:53078990-53079040	SAEC	small airway:	n/a
40	chr3:53080440-53080490	PFSK-1	brain:	n/a
41	chr3:53080682-53080732	HRPEpiC	eye:	n/a
42	chr3:53080682-53080732	HCF	heart:	n/a
43	chr3:53079796-53079846	HCT-116	colon:	n/a
44	chr3:53079105-53079155	GM12891	blood:	n/a
45	chr3:53080682-53080732	GM12878	blood:	n/a
46	chr3:53078990-53079040	K562	blood:	n/a
47	chr3:53078990-53079040	NH-A	brain:	n/a
48	chr3:53080682-53080732	GM19239	blood:	n/a
49	chr3:53079105-53079155	CMK	blood:	n/a
50	chr3:53080682-53080732	NHBE	bronchial:	n/a

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:46273919..46274424-chr3:53078893..53079893,2	Hela-S3	cervix:
2	chr3:52973930..52976171-chr3:53081053..53083269,2	MCF-7	breast:
3	chr3:53077653..53079153-chr3:53079208..53080925,2	K562	blood:
4	chr20:33999620..34000214-chr3:53080089..53080662,2	Hela-S3	cervix:
5	chr3:53079254..53081173-chr3:53081236..53082757,2	MCF-7	breast:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PRKCD-2	chr3:53080091-53082182	NONHSAT089977
2	lnc-RFT1-5	chr3:53080476-53080766	NONHSAT089975
3	lnc-RFT1-5	chr3:53079832-53080073	NONHSAT089976

No data

Variant related genes	Relation type
SFMBT1	TF binding region
SFMBT1	CpG island
ENSG00000163935	chromatin interactions
ENSG00000101019	chromatin interactions
ENSG00000267395	chromatin interactions

Extended variants
information (count: 72 )
Associated
traits (count: 90 )

Variant overlapped rSNPs/rCNVs (count:72 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs543020302	chr3:53078737-53078738	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs559652279	chr3:53078766-53078767	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs531868277	chr3:53078767-53078768	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs577988739	chr3:53078794-53078795	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs545501215	chr3:53078837-53078838	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs565518067	chr3:53078867-53078868	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs144110665	chr3:53079084-53079085	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs547627584	chr3:53079097-53079098	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs77313712	chr3:53079120-53079121	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs116211523	chr3:53079125-53079126	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs548991774	chr3:53079145-53079146	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs568498260	chr3:53079175-53079176	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs528071162	chr3:53079221-53079222	Active TSS Bivalent/Poised TSS Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs557430701	chr3:53079296-53079297	Active TSS Bivalent/Poised TSS Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs112219780	chr3:53079306-53079307	Active TSS Bivalent/Poised TSS Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs112661572	chr3:53079441-53079442	Active TSS Bivalent/Poised TSS Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs572148840	chr3:53079698-53079699	Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs6808387	chr3:53079732-53079733	Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs533749305	chr3:53079796-53079797	Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs553654614	chr3:53079908-53079909	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
21	rs185075398	chr3:53079927-53079928	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
22	rs548907735	chr3:53079934-53079935	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
23	rs111501878	chr3:53080020-53080021	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
24	rs111290679	chr3:53080021-53080022	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
25	rs573897625	chr3:53080055-53080056	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
26	rs542533582	chr3:53080067-53080068	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
27	rs148697261	chr3:53080125-53080126	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
28	rs142052001	chr3:53080137-53080138	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
29	rs2564941	chr3:53080148-53080149	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs527745361	chr3:53080203-53080204	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
31	rs541627963	chr3:53080204-53080205	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
32	rs200910296	chr3:53080252-53080253	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
33	rs146676997	chr3:53080281-53080282	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
34	rs376079802	chr3:53080308-53080309	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
35	rs530459747	chr3:53080328-53080329	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
36	rs562214812	chr3:53080362-53080363	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
37	rs139195126	chr3:53080374-53080375	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
38	rs562193061	chr3:53080383-53080384	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
39	rs529435408	chr3:53080502-53080503	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
40	rs547598231	chr3:53080503-53080504	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
41	rs565965336	chr3:53080507-53080508	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
42	rs531211710	chr3:53080537-53080538	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
43	rs3821872	chr3:53080555-53080556	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
44	rs571028949	chr3:53080581-53080582	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
45	rs376081469	chr3:53080582-53080583	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
46	rs117010781	chr3:53080605-53080606	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
47	rs547594816	chr3:53080608-53080609	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
48	rs567331512	chr3:53080610-53080611	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
49	rs551700161	chr3:53080650-53080651	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
50	rs188228007	chr3:53080680-53080681	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:90)

Disease	PMID	Source
Acute myeloid leukemia	20729466	CNVD
Urothelial carcinoma	18382360	CNVD
Melanoma	18172304	CNVD
Cervical cancer	21062161	CNVD
Hirschsprung''s Disease	21712996	CNVD
Glioblastoma multiforme	21080181	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Insulin resistance	16721378	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Oral cancer	19627613	CNVD
Renal cell carcinoma	19461508	CNVD
Epithelial cancer	22065749	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Acute myeloid leukemia	16864856	CNVD
Liposarcoma	21253554	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Pancreatic endocrine tumor	20981439	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Oral cancer	21386901	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Retinoblastoma	21504564	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Renal cell carcinoma	21668985	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Lung cancer	18438408	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Esophageal cancer	20955586	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Breast cancer	17133270	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Melanoma	20688739	CNVD
Acute myeloid leukemia	21251322	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	16397240	CNVD
Breast cancer	22032731	CNVD
Non-small cell lung cancer	20864512	CNVD
Colorectal cancer	16912164	CNVD
Non-small cell lung cancer	19010865	CNVD
Colorectal cancer	16272173	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Breast cancer	21785460	CNVD
Neuroblastoma	17327916	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Septo-optic dysplasia	21572526	CNVD
Biliary cancer	19435499	CNVD
Squamous cell cancer	20885788	CNVD
Myelofibrosis	22110671	CNVD
Urothelial cell carcinoma	18451213	CNVD
Ventriculomegaly	21325761	CNVD
Breast cancer	16608533	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Lung cancer	16618734	CNVD
Neuroblastoma	19686582	CNVD
Renal cell carcinoma	18765545	CNVD
Adrenocortical carcinoma	18281524	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
small cell lung cancer	20016488	CNVD

Chromatin state (count:393 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53077400-53079000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
2	chr3:53077600-53078800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
3	chr3:53077600-53079000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
4	chr3:53077600-53079000	Flanking Active TSS	Dnd41	blood
5	chr3:53077800-53078800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:53077800-53080800	Active TSS	Right Atrium	heart
7	chr3:53078000-53081200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr3:53078200-53078800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:53078200-53078800	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
10	chr3:53078200-53078800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:53078200-53078800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:53078200-53078800	Flanking Active TSS	Brain Angular Gyrus	brain
13	chr3:53078200-53078800	Flanking Active TSS	Brain Anterior Caudate	brain
14	chr3:53078200-53078800	Flanking Active TSS	Fetal Brain Male	brain
15	chr3:53078200-53078800	Flanking Active TSS	Fetal Brain Female	brain
16	chr3:53078200-53078800	Flanking Active TSS	K562	blood
17	chr3:53078200-53079000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr3:53078200-53079000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
19	chr3:53078200-53079000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr3:53078200-53079000	Flanking Active TSS	Liver	Liver
21	chr3:53078200-53079000	Flanking Active TSS	Duodenum Mucosa	Duodenum
22	chr3:53078200-53079000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
23	chr3:53078200-53079000	Flanking Active TSS	Stomach Smooth Muscle	stomach
24	chr3:53078200-53079000	Flanking Active TSS	HMEC	breast
25	chr3:53078200-53079000	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
26	chr3:53078200-53079000	Flanking Active TSS	NHEK	skin
27	chr3:53078200-53079000	Flanking Active TSS	Osteobl	bone
28	chr3:53078200-53080200	Active TSS	Colonic Mucosa	Colon
29	chr3:53078200-53080800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
30	chr3:53078200-53080800	Active TSS	Small Intestine	intestine
31	chr3:53078200-53081200	Active TSS	Pancreatic Islets	Pancreatic Islet
32	chr3:53078400-53078800	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
33	chr3:53078400-53078800	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
34	chr3:53078400-53078800	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
35	chr3:53078400-53078800	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
36	chr3:53078400-53078800	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr3:53078400-53078800	Flanking Active TSS	Primary B cells from peripheral blood	blood
38	chr3:53078400-53078800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
39	chr3:53078400-53078800	Flanking Active TSS	Brain Substantia Nigra	brain
40	chr3:53078400-53078800	Flanking Active TSS	Fetal Heart	heart
41	chr3:53078400-53078800	Flanking Active TSS	Fetal Kidney	kidney
42	chr3:53078400-53078800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
43	chr3:53078400-53078800	Flanking Active TSS	Stomach Mucosa	stomach
44	chr3:53078400-53078800	Enhancers	Spleen	Spleen
45	chr3:53078400-53078800	Flanking Bivalent TSS/Enh	HepG2	liver
46	chr3:53078400-53078800	Flanking Active TSS	NHDF-Ad	bronchial
47	chr3:53078400-53078800	Flanking Active TSS	NHLF	lung
48	chr3:53078400-53079000	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
49	chr3:53078400-53079000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
50	chr3:53078400-53079000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood

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