Variant report

Variant	esv3462038
Chromosome Location	chr3:75105194-75111287
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:75105526..75106181-chr3:75220559..75221295,2	MCF-7	breast:

Extended variants
information (count: 171 )
Associated
traits (count: 77 )

Variant overlapped rSNPs/rCNVs (count:171 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs186019874	chr3:75105203-75105204	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs570727590	chr3:75105284-75105285	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs565929867	chr3:75105289-75105290	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs114672606	chr3:75105291-75105292	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs190336103	chr3:75105349-75105350	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs181887878	chr3:75105364-75105365	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs368332508	chr3:75105473-75105474	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs570168786	chr3:75105508-75105509	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs115707233	chr3:75105518-75105519	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs548974959	chr3:75105526-75105527	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs149688329	chr3:75105529-75105530	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs538554037	chr3:75105540-75105541	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs187262082	chr3:75105557-75105558	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs78331907	chr3:75105562-75105563	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs545840092	chr3:75105566-75105567	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs577973365	chr3:75105611-75105612	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs146706707	chr3:75105612-75105613	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs190832392	chr3:75105690-75105691	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs78219203	chr3:75105697-75105698	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs111657570	chr3:75105704-75105705	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs112328763	chr3:75105726-75105727	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs200019042	chr3:75105794-75105795	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs564920871	chr3:75105797-75105798	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs201839020	chr3:75105804-75105805	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs386662408	chr3:75105806-75105807	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs200314152	chr3:75105807-75105808	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs200031887	chr3:75105813-75105814	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs369938952	chr3:75105814-75105815	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs201532561	chr3:75105816-75105817	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs146795978	chr3:75105817-75105818	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs376825800	chr3:75105819-75105820	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs200482868	chr3:75105828-75105829	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs371182804	chr3:75105832-75105833	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs199646564	chr3:75105844-75105845	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs200707691	chr3:75105845-75105846	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs147720416	chr3:75105856-75105857	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs71687960	chr3:75105857-75105858	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs386397074	chr3:75105872-75105873	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs56059065	chr3:75105875-75105876	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs182974468	chr3:75105880-75105881	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs540830072	chr3:75105928-75105929	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs560172632	chr3:75105930-75105931	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs561912441	chr3:75105954-75105955	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs527795703	chr3:75105957-75105958	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs548938309	chr3:75105982-75105983	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs187522029	chr3:75105988-75105989	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs191603206	chr3:75106030-75106031	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs145245309	chr3:75106039-75106040	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs138456603	chr3:75106079-75106080	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs559411483	chr3:75106083-75106084	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:77)

Disease	PMID	Source
Acute myeloid leukemia	20729466	CNVD
Glioblastoma multiforme	21080181	CNVD
Melanoma	18172304	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Insulin resistance	16721378	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Oral cancer	19627613	CNVD
Renal cell carcinoma	19461508	CNVD
Epithelial cancer	22065749	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Acute myeloid leukemia	16864856	CNVD
Liposarcoma	21253554	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Pancreatic endocrine tumor	20981439	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Oral cancer	21386901	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Retinoblastoma	21504564	CNVD
Renal cell carcinoma	21668985	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Lung cancer	18438408	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Esophageal cancer	20955586	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Acute myeloid leukemia	21251322	CNVD
Hirschsprung''s Disease	21712996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
Autism	22102821	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Prostate cancer	18632612	CNVD
Metanephric adenoma	20802469	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	21364760	CNVD
Breast cancer	21509527	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	21399695	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Colorectal cancer	16272173	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Soft tissue tumor	16732325	CNVD
Chronic lymphocytic leukemia	20421269	CNVD

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:75104400-75108600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr3:75108600-75109000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:75110800-75111400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr3:75110800-75111400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr3:75110800-75111400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr3:75111000-75111400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr3:75111000-75111400	Enhancers	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links