Variant report

Variant	esv3465836
Chromosome Location	chr4:101751935-101752263
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:101747895..101750481-chr4:101750941..101753813,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 73 )

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs13130074	chr4:101751938-101751939	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs62305842	chr4:101751945-101751946	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs568879349	chr4:101751947-101751948	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs544375085	chr4:101751979-101751980	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs539138791	chr4:101751987-101751988	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs370182871	chr4:101752000-101752001	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs554309518	chr4:101752019-101752020	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs572428302	chr4:101752020-101752021	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs543362431	chr4:101752042-101752043	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs563140668	chr4:101752083-101752084	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs6817785	chr4:101752114-101752115	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs548131716	chr4:101752132-101752133	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs368846824	chr4:101752133-101752134	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs370157963	chr4:101752170-101752171	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs374980562	chr4:101752195-101752196	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs113486644	chr4:101752202-101752203	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs190460888	chr4:101752239-101752240	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs527810957	chr4:101752242-101752243	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs559699314	chr4:101752249-101752250	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs552371517	chr4:101752251-101752252	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs201849032	chr4:101752255-101752256	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs564742706	chr4:101752256-101752257	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs145773832	chr4:101752260-101752261	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:73)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Medulloblastoma	21979893	CNVD
Neuroblastoma	18923191	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Breast cancer	21858162	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	17603634	CNVD
Hepatocellular carcinoma	16750200	CNVD
Myxofibrosarcoma	16751306	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Breast cancer	16272173	CNVD
Colorectal cancer	19359472	CNVD
Malignant mesothelioma	18160781	CNVD
Medulloblastoma	18056178	CNVD
Multiple myeloma	17077331	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Oral squamous cell carcinoma	17134496	CNVD
4q-syndrome	17576883	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Muscular dystrophy	21149563	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Cervical cancer	21062161	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Lung cancer	19208797	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	21785460	CNVD
Myelodysplastic syndrome	21251322	CNVD
Lung cancer	18438408	CNVD
Cancer	22429812	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	21183584	CNVD
primary effusion lymphomas	17116491	CNVD
small cell lung cancer	20016488	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17133270	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Colorectal cancer	20459617	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Hirschsprung''s Disease	21712996	CNVD
Congenital anomalies of the kidney and urinary tract	20505237	CNVD
Breast cancer	17393978	CNVD
Ovarian cancer	21720365	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	16573809	CNVD
Multiple myeloma	16616336	CNVD
Melanoma	20688739	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	18000384	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101745400-101758800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr4:101750400-101753600	Weak transcription	Primary neutrophils fromperipheralblood	blood

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