Variant report

Variant	esv3466134
Chromosome Location	chr4:121121867-121122488
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 74 )

Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs139429253	chr4:121121881-121121882	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs150060043	chr4:121121917-121121918	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs550644117	chr4:121121925-121121926	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs71615728	chr4:121121933-121121934	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs183092201	chr4:121121935-121121936	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs12642382	chr4:121121965-121121966	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs70948329	chr4:121121988-121121989	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs2716017	chr4:121122006-121122007	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs2716016	chr4:121122008-121122009	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs188123699	chr4:121122027-121122028	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs2662689	chr4:121122036-121122037	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs546188886	chr4:121122054-121122055	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs2716015	chr4:121122067-121122068	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs371005773	chr4:121122132-121122133	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs79497316	chr4:121122158-121122159	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs192128607	chr4:121122162-121122163	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs201300994	chr4:121122177-121122178	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs549196275	chr4:121122183-121122184	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs201804227	chr4:121122188-121122189	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs182718260	chr4:121122193-121122194	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs537844064	chr4:121122203-121122204	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs557679986	chr4:121122207-121122208	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs535192774	chr4:121122265-121122266	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs187921485	chr4:121122309-121122310	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs539311567	chr4:121122310-121122311	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs11934104	chr4:121122397-121122398	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs575729321	chr4:121122409-121122410	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs370362363	chr4:121122444-121122445	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs542041725	chr4:121122446-121122447	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:74)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Medulloblastoma	21979893	CNVD
Neuroblastoma	18923191	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Breast cancer	21858162	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Breast cancer	16272173	CNVD
Colorectal cancer	19359472	CNVD
Malignant mesothelioma	18160781	CNVD
Medulloblastoma	18056178	CNVD
Multiple myeloma	17077331	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Oral squamous cell carcinoma	17134496	CNVD
4q-syndrome	17576883	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Muscular dystrophy	21149563	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Cervical cancer	21062161	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Lung cancer	19208797	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	21785460	CNVD
Myelodysplastic syndrome	21251322	CNVD
Lung cancer	18438408	CNVD
Cancer	22429812	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	21183584	CNVD
primary effusion lymphomas	17116491	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17133270	CNVD
Colorectal cancer	20459617	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Congenital anomalies of the kidney and urinary tract	20505237	CNVD
Breast cancer	17393978	CNVD
Esophageal cancer	21851588	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Colorectal cancer	16272173	CNVD
Testicular germ cell tumor	18059402	CNVD
Ovarian cancer	22174824	CNVD
Neuroblastoma	21899760	CNVD
Renal cell carcinoma	18194544	CNVD
Myelofibrosis	22110671	CNVD
Myelodysplastic syndrome	18508791	CNVD
small cell lung cancer	20016488	CNVD
Clear cell renal cell carcinoma	18791270	CNVD
Acute myeloid leukemia	19651601	CNVD
Gastric cancer	16891809	CNVD
Olfactory neuroblastoma	18408657	CNVD
early-passage human iPS cells	21368824	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121121800-121122800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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