Variant report

Variant	esv3467517
Chromosome Location	chr4:187213962-187214753
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-F11-5	chr4:187214706-187215141	NONHSAT099655
2	lnc-F11-5	chr4:187213973-187214061	NONHSAT099655

Extended variants
information (count: 55 )
Associated
traits (count: 75 )

Variant overlapped rSNPs/rCNVs (count:55 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs13138256	chr4:187213970-187213971	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs531167903	chr4:187214012-187214013	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
3	rs76828452	chr4:187214040-187214041	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
4	rs561090366	chr4:187214041-187214042	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
5	rs530122901	chr4:187214064-187214065	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs572980177	chr4:187214076-187214077	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs77496163	chr4:187214087-187214088	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs75822539	chr4:187214088-187214089	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs77635529	chr4:187214096-187214097	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs149773405	chr4:187214193-187214194	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs199878267	chr4:187214200-187214201	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs571431700	chr4:187214216-187214217	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs537299691	chr4:187214230-187214231	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs145688793	chr4:187214257-187214258	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs573841060	chr4:187214258-187214259	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs536356388	chr4:187214271-187214272	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs553075283	chr4:187214284-187214285	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs75625902	chr4:187214285-187214286	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs377249996	chr4:187214344-187214345	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs72367344	chr4:187214402-187214403	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs77746934	chr4:187214416-187214417	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs79986147	chr4:187214418-187214419	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs140917472	chr4:187214428-187214429	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs150384826	chr4:187214429-187214430	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs71961573	chr4:187214430-187214431	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs201769679	chr4:187214453-187214454	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs368806331	chr4:187214463-187214464	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs374597019	chr4:187214495-187214496	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs559797988	chr4:187214499-187214500	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs544661930	chr4:187214532-187214533	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs112164500	chr4:187214535-187214536	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs112439484	chr4:187214538-187214539	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs374382795	chr4:187214543-187214544	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs112537792	chr4:187214555-187214556	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs544159036	chr4:187214568-187214569	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs185376902	chr4:187214576-187214577	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs386683494	chr4:187214583-187214584	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs190285806	chr4:187214584-187214585	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs182855079	chr4:187214588-187214589	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs111502249	chr4:187214589-187214590	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs111653481	chr4:187214597-187214598	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs530183473	chr4:187214599-187214600	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs111973940	chr4:187214600-187214601	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs386683495	chr4:187214613-187214614	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs560370657	chr4:187214614-187214615	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs112091372	chr4:187214618-187214619	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs113839272	chr4:187214626-187214627	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs187229913	chr4:187214639-187214640	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs552287774	chr4:187214640-187214641	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs571559440	chr4:187214644-187214645	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:75)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Medulloblastoma	21979893	CNVD
Neuroblastoma	18923191	CNVD
Breast cancer	21858162	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Colorectal cancer	19359472	CNVD
Malignant mesothelioma	18160781	CNVD
Medulloblastoma	18056178	CNVD
Multiple myeloma	17077331	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Oral squamous cell carcinoma	17134496	CNVD
4q-syndrome	17576883	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Muscular dystrophy	21149563	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Cervical cancer	21062161	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Wilms tumour	21544195	CNVD
Lung cancer	18438408	CNVD
Cancer	22429812	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	16272173	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Congenital anomalies of the kidney and urinary tract	20505237	CNVD
Testicular germ cell tumor	18059402	CNVD
Ovarian cancer	22174824	CNVD
Olfactory neuroblastoma	18408657	CNVD
Breast cancer	21785460	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	21633010	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20581869	CNVD
Hepatocellular carcinoma	16750200	CNVD
abnormal development	18461090	CNVD
Neuroblastoma	16790693	CNVD
Colorectal cancer	16774939	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD
Basal cell lymphoma	17053054	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Lung adenocarcinoma	17086460	CNVD
Facioscapulohumeral muscular dystrophy	21829175	CNVD
Disorders of sex development	21048976	CNVD
Ovarian cancer	20844748	CNVD
Autism	18414403	CNVD
Urothelial carcinoma	21177765	CNVD
Cancer	20164920	CNVD
Cancer	20164919	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	20409316	CNVD
Rhabdomyosarcoma	16790082	CNVD

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:187205800-187217400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:187209800-187217600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr4:187212600-187219000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr4:187212800-187214000	Weak transcription	Pancreas	Pancrea
5	chr4:187213600-187217600	Weak transcription	Liver	Liver

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