Variant report

Variant	esv3470807
Chromosome Location	chr11:65933715-65939467
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:65835851..65838515-chr11:65935977..65938338,2	MCF-7	breast:
2	chr11:65937498..65939966-chr11:65945396..65947258,2	K562	blood:
3	chr11:65932311..65934818-chr11:65935989..65937985,2	K562	blood:
4	chr11:65836198..65839140-chr11:65932253..65934463,3	K562	blood:
5	chr11:65932311..65934818-chr11:65935989..65937985,2	K562	blood:
6	chr11:65938428..65942314-chr11:65944673..65947481,3	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KLC2-2	chr11:65933321-65935022	l_501_chr11:65933320-65934902_prostate

No data

Variant related genes	Relation type
ENSG00000175115	chromatin interactions
ENSG00000255038	chromatin interactions

Extended variants
information (count: 172 )
Associated
traits (count: 93 )

Variant overlapped rSNPs/rCNVs (count:172 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs550590555	chr11:65933767-65933768	Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
2	rs570505690	chr11:65933903-65933904	Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
3	rs539325248	chr11:65933909-65933910	Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
4	rs112761269	chr11:65933918-65933919	Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
5	rs533884532	chr11:65933931-65933932	Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
6	rs191530257	chr11:65933936-65933937	Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
7	rs534922792	chr11:65933940-65933941	Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
8	rs531296183	chr11:65933941-65933942	Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
9	rs184895347	chr11:65933949-65933950	Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
10	rs188060983	chr11:65934063-65934064	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
11	rs150414005	chr11:65934123-65934124	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
12	rs115259914	chr11:65934135-65934136	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
13	rs556919657	chr11:65934215-65934216	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
14	rs576853476	chr11:65934240-65934241	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
15	rs138198138	chr11:65934281-65934282	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
16	rs111715606	chr11:65934295-65934296	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
17	rs374118261	chr11:65934337-65934338	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
18	rs116472381	chr11:65934344-65934345	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
19	rs193264427	chr11:65934366-65934367	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
20	rs541954	chr11:65934368-65934369	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs116255110	chr11:65934398-65934399	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
22	rs184995645	chr11:65934440-65934441	Weak transcription Strong transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
23	rs532982444	chr11:65934466-65934467	Weak transcription Strong transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
24	rs552872744	chr11:65934525-65934526	Weak transcription Strong transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
25	rs801733	chr11:65934549-65934550	Weak transcription Strong transcription Enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs527259171	chr11:65934603-65934604	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
27	rs190334762	chr11:65934605-65934606	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
28	rs546925051	chr11:65934606-65934607	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
29	rs564141587	chr11:65934623-65934624	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
30	rs181154842	chr11:65934672-65934673	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
31	rs184113768	chr11:65934699-65934700	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
32	rs557054815	chr11:65934722-65934723	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
33	rs72936625	chr11:65934732-65934733	Weak transcription Strong transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs545802901	chr11:65934797-65934798	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
35	rs201219678	chr11:65934802-65934803	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
36	rs114053171	chr11:65934804-65934805	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
37	rs201095252	chr11:65934822-65934823	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
38	rs202168105	chr11:65934823-65934824	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
39	rs573049200	chr11:65934880-65934881	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
40	rs545768061	chr11:65934894-65934895	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
41	rs542145965	chr11:65935057-65935058	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs563749582	chr11:65935112-65935113	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs200559832	chr11:65935158-65935159	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs561719702	chr11:65935164-65935165	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs513474	chr11:65935189-65935190	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs1893712	chr11:65935192-65935193	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs188072692	chr11:65935195-65935196	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs548381717	chr11:65935207-65935208	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs181020715	chr11:65935209-65935210	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs7126865	chr11:65935216-65935217	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:93)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Autism	22495311	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Glioblastoma multiforme	21138945	CNVD
Acute myeloid leukemia	20729466	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	21080181	CNVD
Smith-Lemli-Opitz syndrome	21572526	CNVD
Multiple myeloma	16461302	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Metanephric adenoma	20802469	CNVD
Chordoma	21602918	CNVD
Melanoma	18172304	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
ovarian endometriomas	16273235	CNVD
Breast cancer	16417655	CNVD
Myelofibrosis	22110671	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Prostate cancer	17217626	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Breast cancer	21045282	CNVD
Breast cancer	21806811	CNVD
Breast cancer	22002566	CNVD
Ductal carcinoma	18381933	CNVD
Retinoblastoma	22278416	CNVD
Breast cancer	20953835	CNVD
oto-dental syndrome	17656375	CNVD
Asthma	21956041	CNVD
Breast cancer	17603634	CNVD
Ovarian neoplasms	16753589	CNVD
Non-small cell lung cancer	20864512	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cervical cancer	21062161	CNVD
Breast cancer	21509527	CNVD
Anaplastic thyroid cancer	18753363	CNVD
Breast cancer	17001317	CNVD
Oral squamous cell carcinoma	16619035	CNVD
Intracranial aneurysm	16715129	CNVD
Colorectal cancer	16272173	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Colorectal cancer	16882699	CNVD
Berardinelli-seip congenital generalized lipodystrophy	17668395	CNVD
Spinal muscular atrophy	17668395	CNVD
Neonatal seizures	17668395	CNVD
Neonatal seizures	17668391	CNVD
Neuroticism	17667963	CNVD
Cancer	17916600	CNVD
Squamous cell cancer	19047905	CNVD
Multiple endocrine neoplasia type 1	19566914	CNVD
XY sex reversal	17503084	CNVD
Berardinelli-seip congenital generalized lipodystrophy	17668391	CNVD
Maculopathy	17646752	CNVD
Breast cancer	17899364	CNVD
Breast cancer	17157792	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Hodgkin''s lymphoma	17606441	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Hodgkin''s lymphoma	18641027	CNVD

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65905200-65947000	Weak transcription	Fetal Lung	lung
2	chr11:65905400-65939600	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr11:65905800-65952800	Weak transcription	Fetal Stomach	stomach
4	chr11:65906000-65960200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr11:65910000-65939600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr11:65910600-65939600	Weak transcription	NHDF-Ad	bronchial
7	chr11:65911000-65939400	Weak transcription	NH-A	brain
8	chr11:65911000-65943200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:65913400-65951000	Weak transcription	Spleen	Spleen
10	chr11:65914200-65939600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr11:65918000-65949200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr11:65919000-65939800	Weak transcription	Primary B cells from peripheral blood	blood
13	chr11:65920400-65954800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:65924800-65943200	Weak transcription	NHEK	skin
15	chr11:65925000-65939400	Weak transcription	Osteobl	bone
16	chr11:65925000-65939800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr11:65925200-65939600	Weak transcription	HMEC	breast
18	chr11:65925400-65955000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr11:65925600-65952800	Weak transcription	Primary hematopoietic stem cells	blood
20	chr11:65925800-65955000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr11:65927200-65939800	Weak transcription	Lung	lung
22	chr11:65927200-65951000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr11:65927200-65951000	Weak transcription	Pancreas	Pancrea
24	chr11:65927200-65958400	Weak transcription	Gastric	stomach
25	chr11:65927400-65937800	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr11:65927400-65939600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr11:65927400-65939800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr11:65927600-65947600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr11:65928000-65939600	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr11:65928600-65939800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr11:65928600-65945000	Weak transcription	GM12878-XiMat	blood
32	chr11:65928800-65957000	Weak transcription	Left Ventricle	heart
33	chr11:65929000-65935400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr11:65929400-65934000	Weak transcription	A549	lung
35	chr11:65929400-65960200	Weak transcription	HSMM	muscle
36	chr11:65929600-65939000	Weak transcription	Fetal Heart	heart
37	chr11:65929600-65944400	Weak transcription	Rectal Smooth Muscle	rectum
38	chr11:65929600-65946400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr11:65929600-65977800	Weak transcription	HSMMtube	muscle
40	chr11:65929800-65944400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr11:65930000-65960200	Weak transcription	Colon Smooth Muscle	Colon
42	chr11:65930000-65960800	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr11:65930200-65934400	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr11:65930200-65939800	Weak transcription	Esophagus	oesophagus
45	chr11:65930200-65942600	Weak transcription	Adipose Nuclei	Adipose
46	chr11:65930800-65939800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr11:65931000-65934400	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr11:65931200-65939600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr11:65931600-65937400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr11:65931600-65937800	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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