Variant report

Variant	esv3471081
Chromosome Location	chr5:100071753-100077851
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:100073871..100076252-chrX:117692329..117695024,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 83 )

Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs573716603	chr5:100071773-100071774	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs537089680	chr5:100071778-100071779	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs555635284	chr5:100071783-100071784	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs157178	chr5:100071794-100071795	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
5	rs535424746	chr5:100071805-100071806	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs75102278	chr5:100071809-100071810	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs143590398	chr5:100071900-100071901	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs188665448	chr5:100071901-100071902	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs557662794	chr5:100071919-100071920	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs545066759	chr5:100071934-100071935	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs181306269	chr5:100071935-100071936	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs148061806	chr5:100071945-100071946	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs367562868	chr5:100071967-100071968	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs565258549	chr5:100074019-100074020	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs115635970	chr5:100074038-100074039	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs551289501	chr5:100074129-100074130	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs569620093	chr5:100074140-100074141	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs279096	chr5:100074148-100074149	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
19	rs548456170	chr5:100074161-100074162	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs113202851	chr5:100074178-100074179	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs189958239	chr5:100074183-100074184	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs112911904	chr5:100074189-100074190	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs533621342	chr5:100074294-100074295	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs4395612	chr5:100074322-100074323	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs115391930	chr5:100074327-100074328	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs10073738	chr5:100074353-100074354	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs537486779	chr5:100074355-100074356	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs144617630	chr5:100074376-100074377	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:83)

Disease	PMID	Source
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Medulloblastoma	21979893	CNVD
Phyllodes tumor	17334353	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Cancer	16751803	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Melanoma	18172304	CNVD
Glioma	20126413	CNVD
Breast cancer	17393978	CNVD
Cancer	21359685	CNVD
Non-small cell lung cancer	21829676	CNVD
adenomatous polyposis	22470819	CNVD
Cancer	22429812	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Liposarcoma	21253554	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21858162	CNVD
Leukemia	17361228	CNVD
Myelodysplastic syndrome	18508791	CNVD
5q-syndrome	17576883	CNVD
Gastric cancer	17908304	CNVD
Lung cancer	16740712	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Barrett''s syndrome	19417022	CNVD
Lung cancer	18438408	CNVD
Retinoblastoma	22278416	CNVD
Bipolar disorder	18458673	CNVD
Thyroid cancer	19087340	CNVD
Breast cancer	21785460	CNVD
Merkel cell carcinoma	19020549	CNVD
Squamous cell cancer	20885788	CNVD
Hepatocellular carcinoma	16750200	CNVD
Neurodevelopmental disorder	22521361	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	17133270	CNVD
Acute myeloid leukemia	20729466	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Acute myeloid leukemia	21251322	CNVD
lymphocytic leukemia	21291569	CNVD
Testicular cancer	18059402	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	16573809	CNVD
Renal cell carcinoma	18194544	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Cancer	20164920	CNVD
Myelodysplastic syndrome	21251322	CNVD
abnormal development	18461090	CNVD
Myelofibrosis	22110671	CNVD
Colorectal cancer	16774939	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Multiple myeloma	17550852	CNVD
Glioblastoma multiforme	22286061	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Ovarian cancer	21720365	CNVD
Prostate cancer	16461572	CNVD
Neurocytoma	17123091	CNVD
Salivary gland tumor	18059337	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:100071200-100072000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
2	chr5:100074000-100074400	Enhancers	Primary hematopoietic stem cells short term culture	blood

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