Variant report

Variant	esv3472676
Chromosome Location	chr6:63563549-63566125
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 174 )
Associated
traits (count: 77 )

Variant overlapped rSNPs/rCNVs (count:174 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs528892377	chr6:63563560-63563561	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs117831768	chr6:63563576-63563577	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs539025432	chr6:63563581-63563582	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs554516016	chr6:63563588-63563589	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs566332231	chr6:63563595-63563596	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs370317375	chr6:63563603-63563604	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs555113357	chr6:63563670-63563671	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs576547390	chr6:63563675-63563676	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs543530657	chr6:63563678-63563679	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs558226017	chr6:63563680-63563681	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs537058167	chr6:63563681-63563682	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs576467432	chr6:63563683-63563684	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs540581257	chr6:63563684-63563685	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs559224752	chr6:63563688-63563689	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs567548084	chr6:63563692-63563693	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs148086311	chr6:63563693-63563694	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs541673249	chr6:63563697-63563698	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs553037180	chr6:63563699-63563700	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs184116937	chr6:63563715-63563716	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs530615939	chr6:63563723-63563724	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs550290272	chr6:63563747-63563748	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs141012782	chr6:63563773-63563774	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs150222116	chr6:63563788-63563789	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs558896975	chr6:63563793-63563794	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs566393395	chr6:63563829-63563830	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs547412094	chr6:63563853-63563854	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs12192209	chr6:63563862-63563863	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs548577189	chr6:63563867-63563868	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs570275096	chr6:63563925-63563926	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs537235776	chr6:63563929-63563930	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs558238098	chr6:63563932-63563933	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs576481780	chr6:63563945-63563946	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs138842597	chr6:63563954-63563955	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs116644985	chr6:63564027-63564028	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs574335016	chr6:63564040-63564041	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs190669169	chr6:63564063-63564064	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs182005595	chr6:63564074-63564075	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs533076297	chr6:63564077-63564078	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs545633211	chr6:63564104-63564105	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs141773288	chr6:63564110-63564111	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs186242999	chr6:63564118-63564119	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs569884865	chr6:63564131-63564132	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs532618481	chr6:63564134-63564135	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs190606446	chr6:63564143-63564144	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs559815416	chr6:63564148-63564149	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs575377949	chr6:63564149-63564150	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs544347734	chr6:63564150-63564151	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs570211896	chr6:63564151-63564152	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs537215977	chr6:63564152-63564153	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs181421295	chr6:63564154-63564155	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:77)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Lung cancer	18438408	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
small cell lung cancer	20016488	CNVD
Cancer	20164920	CNVD
Prostate cancer	16573809	CNVD
Ovarian cancer	19835627	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Acute myeloid leukemia	20729466	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Glioblastoma multiforme	22286061	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16272173	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:63563000-63572400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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