Variant report

Variant	esv3474748
Chromosome Location	chr6:53648758-53677207
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:889)
CpG islands
(count:977)
Chromatin interactive
region (count:37)
LncRNA
region (count:8)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:889 , 50 per page) page: 1 2 3 4 5 6 7 ... 18

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:53657160-53657351	HepG2	liver:	n/a	n/a
2	ARID3A	chr6:53657660-53658639	HepG2	liver:	n/a	n/a
3	ARID3A	chr6:53659058-53659861	HepG2	liver:	n/a	n/a
4	BACH1	chr6:53658262-53658776	H1-hESC	embryonic stem cell:	n/a	n/a
5	BACH1	chr6:53659401-53660154	H1-hESC	embryonic stem cell:	n/a	n/a
6	BACH1	chr6:53676017-53676359	H1-hESC	embryonic stem cell:	n/a	n/a
7	BACH1	chr6:53660668-53660741	H1-hESC	embryonic stem cell:	n/a	n/a
8	BCL11A	chr6:53676162-53676332	GM12878	blood:	n/a	n/a
9	BCL3	chr6:53659452-53659807	A549	lung:	n/a	n/a
10	BHLHE40	chr6:53659017-53660092	GM12878	blood:	n/a	n/a
11	BHLHE40	chr6:53675989-53676336	GM12878	blood:	n/a	n/a
12	BRCA1	chr6:53658983-53659175	H1-hESC	embryonic stem cell:	n/a	n/a
13	BRCA1	chr6:53659597-53659797	HepG2	liver:	n/a	n/a
14	BRCA1	chr6:53659005-53659817	Hela-S3	cervix:	n/a	n/a
15	CBX3	chr6:53675896-53676455	HCT-116	colon:	n/a	n/a
16	CEBPB	chr6:53667448-53668743	IMR90	lung:	n/a	chr6:53667943-53667955
17	CEBPB	chr6:53665932-53666185	HepG2	liver:	n/a	chr6:53666085-53666096 chr6:53666085-53666098
18	CEBPB	chr6:53659217-53659567	HepG2	liver:	n/a	n/a
19	CEBPB	chr6:53661532-53662018	Hela-S3	cervix:	n/a	chr6:53661952-53661963 chr6:53661690-53661701
20	CEBPB	chr6:53665912-53666239	IMR90	lung:	n/a	chr6:53666085-53666096 chr6:53666085-53666098
21	CEBPB	chr6:53659280-53659326	H1-hESC	embryonic stem cell:	n/a	n/a
22	CEBPB	chr6:53659571-53659744	HepG2	liver:	n/a	n/a
23	CEBPB	chr6:53661084-53661419	MCF-7	breast:	n/a	n/a
24	CEBPB	chr6:53661049-53661265	HepG2	liver:	n/a	n/a
25	CEBPB	chr6:53659825-53659846	HepG2	liver:	n/a	n/a
26	CEBPB	chr6:53663386-53663578	HepG2	liver:	n/a	chr6:53663522-53663533
27	CEBPB	chr6:53659559-53659832	H1-hESC	embryonic stem cell:	n/a	n/a
28	CEBPB	chr6:53659090-53659511	Hela-S3	cervix:	n/a	n/a
29	CEBPB	chr6:53658592-53658792	H1-hESC	embryonic stem cell:	n/a	n/a
30	CEBPD	chr6:53659495-53659976	HepG2	liver:	n/a	n/a
31	CHD1	chr6:53659321-53659654	H1-hESC	embryonic stem cell:	n/a	n/a
32	CHD1	chr6:53659213-53660275	GM12878	blood:	n/a	n/a
33	CHD1	chr6:53658098-53659003	H1-hESC	embryonic stem cell:	n/a	n/a
34	CHD1	chr6:53659875-53660520	H1-hESC	embryonic stem cell:	n/a	n/a
35	CHD2	chr6:53659069-53659919	GM12878	blood:	n/a	n/a
36	CHD2	chr6:53660724-53660806	HepG2	liver:	n/a	n/a
37	CHD2	chr6:53664269-53664271	HepG2	liver:	n/a	n/a
38	CHD2	chr6:53658943-53660237	H1-hESC	embryonic stem cell:	n/a	n/a
39	CHD2	chr6:53660250-53660368	GM12878	blood:	n/a	n/a
40	CHD2	chr6:53658962-53660073	HepG2	liver:	n/a	n/a
41	CHD2	chr6:53658968-53660127	Hela-S3	cervix:	n/a	n/a
42	CHD2	chr6:53672730-53672819	HepG2	liver:	n/a	n/a
43	CHD2	chr6:53661049-53661136	HepG2	liver:	n/a	n/a
44	CREB1	chr6:53658372-53658629	A549	lung:	n/a	n/a
45	CREB1	chr6:53659242-53659964	A549	lung:	n/a	n/a
46	CTBP2	chr6:53658435-53661168	H1-hESC	embryonic stem cell:	n/a	n/a
47	CTCF	chr6:53659160-53659310	NHEK	skin:	n/a	n/a
48	CTCF	chr6:53658360-53658510	HEK293	kidney:	n/a	n/a
49	CTCF	chr6:53659020-53659170	HCM	heart:	n/a	n/a
50	CTCF	chr6:53659124-53659385	Gliobla	brain:	n/a	n/a

(count:977 , 50 per page) page: 1 2 3 4 5 6 7 ... 20

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:53659348-53659398	HUVEC	blood vessel:	n/a
2	chr6:53659348-53659398	HUVEC	blood vessel:	n/a
3	chr6:53660854-53660904	HCT-116	colon:	n/a
4	chr6:53663860-53663910	HUVEC	blood vessel:	n/a
5	chr6:53658866-53658916	GM12891	blood:	n/a
6	chr6:53667257-53667307	MCF-7	breast:	n/a
7	chr6:53656178-53656228	NB4	blood:	n/a
8	chr6:53659618-53659668	PFSK-1	brain:	n/a
9	chr6:53659983-53660033	HCPEpiC	choroid plexus:	n/a
10	chr6:53659618-53659668	NHDF-neo	bronchial:	n/a
11	chr6:53659379-53659429	MCF-7	breast:	n/a
12	chr6:53660854-53660904	U87	brain:	n/a
13	chr6:53659983-53660033	AG09309	skin:	n/a
14	chr6:53660418-53660468	AG04450	lung:	fetal
15	chr6:53667257-53667307	ovcar-3	ovarian:	n/a
16	chr6:53659618-53659668	ECC-1	luminal epithelium:	n/a
17	chr6:53667257-53667307	A549	lung:	n/a
18	chr6:53660053-53660103	HCM	heart:	n/a
19	chr6:53658683-53658733	HEK293	kidney:	embryo
20	chr6:53659983-53660033	NHBE	bronchial:	n/a
21	chr6:53660418-53660468	SAEC	small airway:	n/a
22	chr6:53663860-53663910	BE2_C	brain:	n/a
23	chr6:53663860-53663910	K562	blood:	n/a
24	chr6:53667257-53667307	NH-A	brain:	n/a
25	chr6:53658683-53658733	HCM	heart:	n/a
26	chr6:53660053-53660103	NT2-D1	testis:	n/a
27	chr6:53660548-53660598	AoSMC	blood vessel:	n/a
28	chr6:53660548-53660598	LNCaP	prostate:	n/a
29	chr6:53659379-53659429	Caco-2	colon:	n/a
30	chr6:53660053-53660103	HIPEpiC	eye:	n/a
31	chr6:53660548-53660598	AG04449	skin:	fetal
32	chr6:53656178-53656228	Hela-S3	cervix:	n/a
33	chr6:53658683-53658733	SKMC	muscle:	n/a
34	chr6:53658617-53658667	BJ	skin:	n/a
35	chr6:53656178-53656228	GM19239	blood:	n/a
36	chr6:53659348-53659398	HepG2	liver:	n/a
37	chr6:53659348-53659398	PFSK-1	brain:	n/a
38	chr6:53658683-53658733	HIPEpiC	eye:	n/a
39	chr6:53667257-53667307	PrEC	prostate:	n/a
40	chr6:53663860-53663910	SK-N-SH	brain:	n/a
41	chr6:53659379-53659429	HMEC	breast:	n/a
42	chr6:53660854-53660904	Caco-2	colon:	n/a
43	chr6:53659348-53659398	MCF10A-Er-Src	breast:	n/a
44	chr6:53658683-53658733	CMK	blood:	n/a
45	chr6:53667257-53667307	GM19239	blood:	n/a
46	chr6:53656178-53656228	SK-N-MC	brain:	n/a
47	chr6:53659077-53659127	SK-N-SH	brain:	n/a
48	chr6:53658683-53658733	Caco-2	colon:	n/a
49	chr6:53660418-53660468	CMK	blood:	n/a
50	chr6:53659983-53660033	BE2_C	brain:	n/a

(count:37 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:53657579..53660733-chr6:53674241..53678049,6	MCF-7	breast:
2	chr6:53669263..53671782-chr6:53791090..53793404,2	MCF-7	breast:
3	chr6:53329635..53330329-chr6:53676241..53677108,3	MCF-7	breast:
4	chr6:53660354..53661152-chr6:53734380..53735119,2	MCF-7	breast:
5	chr6:53649557..53653333-chr6:53658830..53661441,3	MCF-7	breast:
6	chr6:53588027..53590620-chr6:53675669..53678421,2	MCF-7	breast:
7	chr17:57969778..57970541-chr6:53659281..53659963,2	MCF-7	breast:
8	chr6:53672081..53674984-chr6:53705343..53707160,2	MCF-7	breast:
9	chr6:53668450..53670040-chr6:53712921..53715850,2	MCF-7	breast:
10	chr6:53668227..53671026-chr6:53671811..53674151,2	MCF-7	breast:
11	chr6:53647188..53649063-chr6:53657660..53659882,3	MCF-7	breast:
12	chr6:53652474..53654178-chr6:53661361..53663423,2	MCF-7	breast:
13	chr6:53655984..53658850-chr6:53782726..53785660,2	MCF-7	breast:
14	chr6:53649451..53651865-chr6:53788090..53790923,2	MCF-7	breast:
15	chr6:53329814..53330329-chr6:53676241..53676983,3	MCF-7	breast:
16	chr6:53663341..53666059-chr6:53671400..53673766,2	MCF-7	breast:
17	chr6:53652284..53655069-chr6:53658520..53660437,2	MCF-7	breast:
18	chr6:53664733..53666465-chr6:53680416..53681978,2	MCF-7	breast:
19	chr6:53651995..53655009-chr6:53655283..53658516,4	MCF-7	breast:
20	chr1:202926993..202927664-chr6:53659752..53660466,2	Hela-S3	cervix:
21	chr6:53658074..53661500-chr6:53665501..53670163,6	MCF-7	breast:
22	chr6:53610265..53615014-chr6:53656858..53662694,9	MCF-7	breast:
23	chr6:53663341..53666059-chr6:53671400..53673766,2	MCF-7	breast:
24	chr6:53651995..53655009-chr6:53655283..53658516,4	MCF-7	breast:
25	chr6:53657464..53661441-chr6:53668474..53671433,5	MCF-7	breast:
26	chr17:46125721..46126711-chr6:53659755..53660427,2	Hela-S3	cervix:
27	chr6:53659447..53660209-chr9:130564726..130565705,2	HCT-116	colon:
28	chr6:53655780..53657957-chr6:53717025..53719931,2	MCF-7	breast:
29	chr6:53659463..53660155-chr8:21998793..21999555,2	Hela-S3	cervix:
30	chr6:53664494..53666032-chr6:53727700..53729812,2	MCF-7	breast:
31	chr6:53671854..53673444-chr6:53682878..53685695,2	MCF-7	breast:
32	chr6:53668227..53671026-chr6:53671811..53674151,2	MCF-7	breast:
33	chr6:53656949..53662173-chr6:53781368..53784554,5	MCF-7	breast:
34	chr6:53668250..53669975-chr6:53693891..53696274,2	MCF-7	breast:
35	chr6:53652474..53654178-chr6:53661361..53663423,2	MCF-7	breast:
36	chr6:53654376..53656765-chr6:53656869..53661036,5	MCF-7	breast:
37	chr6:53658844..53661174-chr6:53672995..53675908,3	MCF-7	breast:

(count:8 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KLHL31-2	chr6:53658339-53658488	NONHSAT113194
2	lnc-KLHL31-2	chr6:53658067-53658147	NONHSAT113194
3	lnc-KLHL31-2	chr6:53658081-53658389	XLOC_005748
4	lnc-KLHL31-2	chr6:53655673-53655986	XLOC_005748
5	lnc-KLHL31-2	chr6:53658081-53658505	XLOC_005748
6	lnc-KLHL31-2	chr6:53658971-53659072	XLOC_005748
7	lnc-KLHL31-2	chr6:53658081-53658147	XLOC_005748
8	lnc-KLHL31-2	chr6:53658081-53658135	XLOC_005748

No data

Variant related genes	Relation type
LRRC1	TF binding region
ENSG00000228614	TF binding region
LRRC1	CpG island
ENSG00000228614	CpG island
ENSG00000108443	chromatin interactions
ENSG00000108423	chromatin interactions
ENSG00000159346	chromatin interactions
ENSG00000228614	chromatin interactions
ENSG00000136877	chromatin interactions
ENSG00000227885	chromatin interactions
ENSG00000271218	chromatin interactions
ENSG00000082641	chromatin interactions
ENSG00000168476	chromatin interactions
ENSG00000137269	chromatin interactions
TMEM20	miRNA target sites
COL5A3	miRNA target sites

Extended variants
information (count: 1055 )
Associated
traits (count: 77 )

Variant overlapped rSNPs/rCNVs (count:1055 , 50 per page) page: 1 2 3 4 5 6 7 ... 22

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs560735645	chr6:53648765-53648766	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
2	rs532169694	chr6:53648769-53648770	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs552232013	chr6:53648770-53648771	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs568857714	chr6:53648806-53648807	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs537990781	chr6:53648877-53648878	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs111413007	chr6:53648895-53648896	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs141123226	chr6:53648899-53648900	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs574114741	chr6:53648909-53648910	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs568252399	chr6:53648926-53648927	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs144748881	chr6:53648945-53648946	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs181538205	chr6:53648963-53648964	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs543084474	chr6:53649013-53649014	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs576755364	chr6:53649133-53649134	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs539331219	chr6:53649156-53649157	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs558568241	chr6:53649177-53649178	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs557410242	chr6:53649180-53649181	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs186002224	chr6:53649203-53649204	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs9463978	chr6:53649267-53649268	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs138598034	chr6:53649319-53649320	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs183334692	chr6:53649346-53649347	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs80228130	chr6:53649364-53649365	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs540446196	chr6:53649374-53649375	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs188067103	chr6:53649400-53649401	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs576637660	chr6:53649432-53649433	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs79287284	chr6:53649469-53649470	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs189651183	chr6:53649475-53649476	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs562469259	chr6:53649490-53649491	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs369939459	chr6:53649530-53649531	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs531166929	chr6:53649537-53649538	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs149584870	chr6:53649594-53649595	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs568034129	chr6:53649680-53649681	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs114689420	chr6:53649692-53649693	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs547224519	chr6:53649735-53649736	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs570303496	chr6:53649737-53649738	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs563443933	chr6:53649738-53649739	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs182881165	chr6:53649782-53649783	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs565058446	chr6:53649808-53649809	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
38	rs35143842	chr6:53649820-53649821	Weak transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
39	rs537818162	chr6:53649821-53649822	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
40	rs555070422	chr6:53649831-53649832	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
41	rs112993116	chr6:53649840-53649841	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
42	rs36086979	chr6:53649847-53649848	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
43	rs113486118	chr6:53649866-53649867	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
44	rs4715422	chr6:53649869-53649870	Weak transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs35875151	chr6:53649871-53649872	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs60139967	chr6:53649904-53649905	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs12211417	chr6:53649930-53649931	Weak transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
48	rs577464667	chr6:53650008-53650009	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs548716691	chr6:53650011-53650012	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs546525763	chr6:53650014-53650015	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:77)

Disease	PMID	Source
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	21080181	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Urothelial carcinoma	18382360	CNVD
Cancer	21183584	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
Gastric cancer	17908304	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Neuroblastoma	16790693	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Osteosarcoma	16790693	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Lung cancer	18438408	CNVD
Neuroblastoma	18923191	CNVD
Breast cancer	17603634	CNVD
Neurocytoma	17123091	CNVD
Systemic lupus erythematosus	17503323	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Breast cancer	16608533	CNVD
Melanoma	18172304	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Neuroblastoma	19686582	CNVD
Neuroblastoma	17289879	CNVD
Breast cancer	17899364	CNVD
Breast cancer	17133270	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Breast cancer	21785460	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	16912164	CNVD
Colorectal cancer	16272173	CNVD
Breast cancer	21364760	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:1176 , 50 per page) page: 1 2 3 4 5 6 7 ... 24

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:53636400-53652800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:53637600-53656000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:53639400-53658000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:53651600-53652200	Enhancers	HepG2	liver
5	chr6:53652000-53652600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr6:53652200-53655800	Weak transcription	HepG2	liver
7	chr6:53652600-53657400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr6:53652800-53656000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:53653000-53655400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:53653200-53656000	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr6:53654600-53656600	Weak transcription	NHEK	skin
12	chr6:53655200-53657800	Weak transcription	Primary hematopoietic stem cells	blood
13	chr6:53655400-53657200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr6:53655800-53656000	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
15	chr6:53655800-53656800	Enhancers	HepG2	liver
16	chr6:53656000-53656200	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:53656000-53656200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:53656000-53657600	Enhancers	Placenta Amnion	Placenta Amnion
19	chr6:53656200-53656600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:53656200-53656800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:53656200-53657200	Enhancers	Pancreas	Pancrea
22	chr6:53656200-53658000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr6:53656600-53656800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr6:53656600-53656800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr6:53656600-53656800	Enhancers	NHEK	skin
26	chr6:53656800-53657000	Enhancers	Fetal Lung	lung
27	chr6:53656800-53657000	Enhancers	Hela-S3	cervix
28	chr6:53656800-53657000	Enhancers	NHLF	lung
29	chr6:53656800-53657200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr6:53656800-53657200	Enhancers	Esophagus	oesophagus
31	chr6:53656800-53657200	Enhancers	Placenta	Placenta
32	chr6:53656800-53657200	Enhancers	Gastric	stomach
33	chr6:53656800-53657400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr6:53656800-53657400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr6:53656800-53657400	Enhancers	Fetal Intestine Large	intestine
36	chr6:53656800-53657400	Enhancers	Fetal Thymus	thymus
37	chr6:53656800-53657400	Enhancers	HMEC	breast
38	chr6:53656800-53657400	Flanking Active TSS	NHEK	skin
39	chr6:53656800-53657800	Enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr6:53656800-53658200	Flanking Active TSS	HepG2	liver
41	chr6:53656800-53661200	Active TSS	Fetal Kidney	kidney
42	chr6:53657000-53657200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr6:53657000-53657600	Enhancers	Duodenum Mucosa	Duodenum
44	chr6:53657000-53657600	Enhancers	Fetal Intestine Small	intestine
45	chr6:53657000-53657600	Weak transcription	Fetal Lung	lung
46	chr6:53657000-53657600	Enhancers	A549	lung
47	chr6:53657000-53658000	Weak transcription	NHLF	lung
48	chr6:53657000-53658600	Weak transcription	Hela-S3	cervix
49	chr6:53657200-53657400	Enhancers	iPS-20b Cell Line	embryonic stem cell
50	chr6:53657200-53657400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin

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