Variant report

Variant	esv3474825
Chromosome Location	chr6:77822335-77823321
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HTR1B-2	chr6:77822661-77823096	XLOC_005768

Variant related genes	Relation type
CHMP2B	miRNA target sites

Extended variants
information (count: 34 )
Associated
traits (count: 99 )

Variant overlapped rSNPs/rCNVs (count:34 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs375942696	chr6:77822347-77822348	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs369084216	chr6:77822348-77822349	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs386702873	chr6:77822349-77822350	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs199529946	chr6:77822350-77822351	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs200371849	chr6:77822351-77822352	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs573831600	chr6:77822392-77822393	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs10943416	chr6:77822407-77822408	Strong transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs559113020	chr6:77822416-77822417	Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs368508279	chr6:77822425-77822426	Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs372420189	chr6:77822444-77822445	Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs117168121	chr6:77822467-77822468	Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs73469025	chr6:77822628-77822629	Strong transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs192680597	chr6:77822651-77822652	Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs530434978	chr6:77822674-77822675	Strong transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
15	rs6908646	chr6:77822686-77822687	Strong transcription ZNF genes & repeats	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs367564190	chr6:77822727-77822728	Strong transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
17	rs562294645	chr6:77822732-77822733	Strong transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
18	rs372371559	chr6:77822743-77822744	Strong transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
19	rs375430190	chr6:77822777-77822778	Strong transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
20	rs566252430	chr6:77822860-77822861	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
21	rs555969276	chr6:77822872-77822873	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
22	rs6933303	chr6:77822880-77822881	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs145181144	chr6:77822924-77822925	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
24	rs184877368	chr6:77822934-77822935	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
25	rs114447808	chr6:77822979-77822980	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
26	rs555728810	chr6:77823046-77823047	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
27	rs567489956	chr6:77823105-77823106	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs79205470	chr6:77823132-77823133	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs6913599	chr6:77823136-77823137	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs546139272	chr6:77823163-77823164	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs572577577	chr6:77823202-77823203	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs530796659	chr6:77823211-77823212	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs544765004	chr6:77823221-77823222	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs140701949	chr6:77823317-77823318	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:99)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Developmental delay	21147756	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Salivary gland tumor	18059337	CNVD
Lung cancer	16773561	CNVD
Glioblastoma multiforme	22286061	CNVD
Urothelial cell carcinoma	18451213	CNVD
Prostate cancer	16461572	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Ductal carcinoma	22052326	CNVD

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77808600-77822400	Weak transcription	Left Ventricle	heart
2	chr6:77822200-77822800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:77822400-77822800	ZNF genes & repeats	Left Ventricle	heart
4	chr6:77822800-77833600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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