Variant report

Variant	esv3475133
Chromosome Location	chr6:61917880-61920637
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 206 )
Associated
traits (count: 67 )

Variant overlapped rSNPs/rCNVs (count:206 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs587679569	chr6:61917889-61917890	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs569746332	chr6:61917900-61917901	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs540905030	chr6:61917908-61917909	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs538130487	chr6:61917909-61917910	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs556227694	chr6:61917913-61917914	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs571370608	chr6:61917917-61917918	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs139030647	chr6:61917957-61917958	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs149911490	chr6:61917972-61917973	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs572192012	chr6:61917984-61917985	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs542770052	chr6:61917995-61917996	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs564691638	chr6:61918011-61918012	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs377627099	chr6:61918029-61918030	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs114290263	chr6:61918048-61918049	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs144939067	chr6:61918052-61918053	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs148984967	chr6:61918097-61918098	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs190779503	chr6:61918135-61918136	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs183940412	chr6:61918137-61918138	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs565442481	chr6:61918140-61918141	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs199500790	chr6:61918143-61918144	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs577327823	chr6:61918145-61918146	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs541282641	chr6:61918169-61918170	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs200675778	chr6:61918198-61918199	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs192472057	chr6:61918202-61918203	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs146903749	chr6:61918203-61918204	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs184688000	chr6:61918216-61918217	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs201161436	chr6:61918249-61918250	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs530114716	chr6:61918321-61918322	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs375046904	chr6:61918327-61918328	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs548311850	chr6:61918328-61918329	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs148306493	chr6:61918329-61918330	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs189188620	chr6:61918339-61918340	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs192862448	chr6:61918340-61918341	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs545009075	chr6:61918378-61918379	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs571464612	chr6:61918387-61918388	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs538796508	chr6:61918391-61918392	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs547591669	chr6:61918394-61918395	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs185477826	chr6:61918404-61918405	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs75820578	chr6:61918416-61918417	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs554751780	chr6:61918417-61918418	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs368844668	chr6:61918433-61918434	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs536658184	chr6:61918446-61918447	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs577054469	chr6:61918448-61918449	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs200560580	chr6:61918491-61918492	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs140334054	chr6:61918492-61918493	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs34227687	chr6:61918494-61918495	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs397886623	chr6:61918495-61918496	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs374358001	chr6:61918519-61918520	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs545976001	chr6:61918545-61918546	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs75564849	chr6:61918549-61918550	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs201444260	chr6:61918575-61918576	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:67)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Oral squamous cell carcinoma	17134496	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Lung cancer	19547694	CNVD
Myelofibrosis	22110671	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	21364760	CNVD

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:61914400-61920600	Weak transcription	K562	blood
2	chr6:61918200-61918400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
3	chr6:61918200-61920200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
4	chr6:61918800-61920000	ZNF genes & repeats	Liver	Liver

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