Variant report

Variant	esv3478239
Chromosome Location	chr7:16022262-16023553
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 84 )

Variant overlapped rSNPs/rCNVs (count:70 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs541653359	chr7:16022267-16022268	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs79677193	chr7:16022273-16022274	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs530721614	chr7:16022285-16022286	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs114740307	chr7:16022304-16022305	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs17169182	chr7:16022306-16022307	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs117076918	chr7:16022322-16022323	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs186644186	chr7:16022325-16022326	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs527606745	chr7:16022334-16022335	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs375318954	chr7:16022336-16022337	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs529904075	chr7:16022339-16022340	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs17169183	chr7:16022371-16022372	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs191446483	chr7:16022374-16022375	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs138184592	chr7:16022391-16022392	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs75873088	chr7:16022435-16022436	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs35808068	chr7:16022470-16022471	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs546706596	chr7:16022506-16022507	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs530593854	chr7:16022522-16022523	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs552381044	chr7:16022577-16022578	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs567008412	chr7:16022581-16022582	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs142876556	chr7:16022613-16022614	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs534811573	chr7:16022628-16022629	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs182611252	chr7:16022630-16022631	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs529538458	chr7:16022644-16022645	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs568106368	chr7:16022668-16022669	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs150649163	chr7:16022699-16022700	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs188078420	chr7:16022744-16022745	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs201358835	chr7:16022759-16022760	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs192735041	chr7:16022768-16022769	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs370916742	chr7:16022771-16022772	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs139763227	chr7:16022772-16022773	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs185217237	chr7:16022777-16022778	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs576964506	chr7:16022795-16022796	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs189179272	chr7:16022839-16022840	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs566941158	chr7:16022869-16022870	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs1013131	chr7:16022874-16022875	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs10279091	chr7:16022883-16022884	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs563417406	chr7:16022923-16022924	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs552815589	chr7:16022934-16022935	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs149415423	chr7:16022954-16022955	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs192503536	chr7:16022965-16022966	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs548129060	chr7:16022969-16022970	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs369250117	chr7:16022987-16022988	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs144783477	chr7:16023009-16023010	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs546688731	chr7:16023018-16023019	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs140191909	chr7:16023025-16023026	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs200561355	chr7:16023028-16023029	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs535466892	chr7:16023051-16023052	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs550968950	chr7:16023078-16023079	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs12673932	chr7:16023083-16023084	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
50	rs535381155	chr7:16023107-16023108	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:84)

Disease	PMID	Source
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Ovarian cancer	22174824	CNVD
Urothelial carcinoma	18382360	CNVD
Medulloblastoma	21979893	CNVD
Lynch syndrome	18415027	CNVD
Biliary cancer	19435499	CNVD
Cancer	16751803	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Wilms tumour	21544195	CNVD
Glioblastoma multiforme	17387387	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	18923191	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21364760	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Leukemia	23979775	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Autism	22495311	CNVD
Prostate cancer	16573809	CNVD
Acute myeloid leukemia	21251322	CNVD
Melanoma	17363583	CNVD
Kartagener syndrome	16639409	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	19242612	CNVD
Autism	18414403	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	21858162	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Cancer	21637783	CNVD
Squamous cell cancer	20885788	CNVD
Breast cancer	16397240	CNVD
Non-small cell lung cancer	21829676	CNVD
Glioblastoma multiforme	17002787	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Glioblastoma multiforme	18628472	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Heart disease	21282601	CNVD
Rubinstein-Taybi syndrome	22470819	CNVD
Alzheimer''s disease	22166940	CNVD
Abnormal phenotypes	18644119	CNVD
Non-syndromic sensorineural hearing loss	22570644	CNVD
Bladder cancer	21909424	CNVD
Cancer	21183584	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16020200-16024200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:16020400-16023800	Weak transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links