Variant report

Variant	esv3479325
Chromosome Location	chr8:62035361-62035893
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:61786507..61789220-chr8:62034568..62037339,2	K562	blood:
2	chr8:62034871..62036799-chr8:62043503..62045064,2	K562	blood:
3	chr8:62034256..62037126-chr8:62040343..62042185,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 93 )

Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs541567809	chr8:62035381-62035382	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs559719876	chr8:62035388-62035389	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs575043668	chr8:62035441-62035442	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs149087032	chr8:62035460-62035461	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs113720594	chr8:62035509-62035510	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs181955896	chr8:62035528-62035529	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs145913952	chr8:62035553-62035554	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs138971442	chr8:62035599-62035600	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs564560522	chr8:62035619-62035620	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs11988706	chr8:62035644-62035645	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs528600342	chr8:62035653-62035654	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs186085107	chr8:62035688-62035689	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs189887566	chr8:62035689-62035690	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs529872577	chr8:62035725-62035726	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs200373939	chr8:62035744-62035745	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs62524520	chr8:62035751-62035752	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs113571942	chr8:62035760-62035761	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs569662503	chr8:62035765-62035766	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs536608728	chr8:62035766-62035767	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs373398478	chr8:62035782-62035783	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs551141461	chr8:62035783-62035784	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs72372640	chr8:62035831-62035832	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs4099520	chr8:62035833-62035834	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs28414183	chr8:62035836-62035837	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs534436479	chr8:62035839-62035840	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs553067774	chr8:62035842-62035843	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs58959777	chr8:62035856-62035857	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs386508516	chr8:62035892-62035893	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:93)

Disease	PMID	Source
Cancer	16751803	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Ewing''s sarcoma	21437220	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Seminomas	18059402	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Pancreatic cancer	21811587	CNVD
Thyroid cancer	19087340	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	17603634	CNVD
Disorders of sex development	21048976	CNVD
Testicular cancer	18059402	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21509527	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Cancer	20164919	CNVD
primary effusion lymphomas	17116491	CNVD
Esophageal cancer	20955586	CNVD
Multiple myeloma	16461302	CNVD
abnormal development	18461090	CNVD
Cancer	20164920	CNVD
Oral cancer	21386901	CNVD
Uveal melanoma	21693616	CNVD
Langer-Giedion syndrome	22283845	CNVD
Cancer	21637783	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	20632083	CNVD
Breast cancer	19602461	CNVD
Cancer	22429812	CNVD
Endometrial cancer	22040021	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oral cancer	19627613	CNVD
Prostate cancer	21088497	CNVD
colon cancer	17210682	CNVD
Breast cancer	21264507	CNVD
Breast cancer	22028636	CNVD
Acute myeloid leukemia	16864856	CNVD
Salivary gland tumor	18059337	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Gastric cancer	17167181	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	16461572	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
head and neck squamous cell carcinoma	18028549	CNVD
Breast cancer	17001317	CNVD
Ewing''s sarcoma	17952124	CNVD
Urothelial carcinoma	21177765	CNVD
Lung cancer	18438408	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	16608533	CNVD
Metanephric adenoma	20802469	CNVD
Hepatocellular carcinoma	18803288	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	18628472	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	16573809	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
Melanoma	22183965	CNVD
Cancer	21949371	CNVD
Non-small cell lung cancer	21829676	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Acute myeloid leukemia	21358987	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Adenocarcinoma	21044232	CNVD
Squamous cell cancer	20885788	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
small cell lung cancer	20016488	CNVD
Sezary syndrome	18413736	CNVD

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:62034000-62037000	Enhancers	GM12878-XiMat	blood
2	chr8:62034200-62035600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr8:62034400-62035400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr8:62034400-62051400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:62035000-62035400	Enhancers	Fetal Brain Male	brain
6	chr8:62035000-62036200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr8:62035200-62036200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:62035400-62036400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr8:62035600-62036000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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