Variant report

Variant	esv3481472
Chromosome Location	chr8:19615507-19617552
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:412)
CpG islands
(count:244)
Chromatin interactive
region (count:4)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:412 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF3	chr8:19615182-19615522	A549	lung:	n/a	n/a
2	BACH1	chr8:19615015-19615572	H1-hESC	embryonic stem cell:	n/a	n/a
3	BCL3	chr8:19615141-19615736	A549	lung:	n/a	n/a
4	BCL3	chr8:19615043-19615926	A549	lung:	n/a	n/a
5	BHLHE40	chr8:19616146-19616279	GM12878	blood:	n/a	n/a
6	BHLHE40	chr8:19616188-19616223	A549	lung:	n/a	n/a
7	BHLHE40	chr8:19615130-19615518	K562	blood:	n/a	n/a
8	BRCA1	chr8:19615359-19615662	Hela-S3	cervix:	n/a	n/a
9	CEBPB	chr8:19615384-19615606	HepG2	liver:	n/a	n/a
10	CEBPB	chr8:19615310-19615771	HepG2	liver:	n/a	n/a
11	CEBPB	chr8:19615318-19615744	H1-hESC	embryonic stem cell:	n/a	n/a
12	CEBPB	chr8:19615306-19615868	HepG2	liver:	n/a	n/a
13	CEBPB	chr8:19615298-19616422	A549	lung:	n/a	n/a
14	CEBPB	chr8:19615309-19615707	IMR90	lung:	n/a	n/a
15	CEBPB	chr8:19615274-19615789	MCF-7	breast:	n/a	n/a
16	CEBPB	chr8:19615218-19615888	Hela-S3	cervix:	n/a	n/a
17	CEBPB	chr8:19615237-19615822	A549	lung:	n/a	n/a
18	CEBPB	chr8:19615304-19615776	K562	blood:	n/a	n/a
19	CEBPB	chr8:19615043-19615946	A549	lung:	n/a	n/a
20	CHD2	chr8:19613887-19615748	Hela-S3	cervix:	n/a	n/a
21	CREB1	chr8:19614845-19615526	H1-hESC	embryonic stem cell:	n/a	n/a
22	CREB1	chr8:19615324-19615696	A549	lung:	n/a	n/a
23	CTBP2	chr8:19613919-19615780	H1-hESC	embryonic stem cell:	n/a	n/a
24	CTCF	chr8:19616200-19616350	HMF	breast:	n/a	n/a
25	CTCF	chr8:19616160-19616310	AG10803	skin:	n/a	n/a
26	CTCF	chr8:19615360-19615510	HepG2	liver:	n/a	n/a
27	CTCF	chr8:19616200-19616350	WERI-Rb-1	eye:	n/a	n/a
28	CTCF	chr8:19616100-19616250	HepG2	liver:	n/a	n/a
29	CTCF	chr8:19616220-19616370	GM12869	blood:	n/a	n/a
30	CTCF	chr8:19616220-19616370	WERI-Rb-1	eye:	n/a	n/a
31	CTCF	chr8:19616129-19616373	Spleen_OC	spleen:	n/a	n/a
32	CTCF	chr8:19616190-19616324	GM10248	blood:	n/a	n/a
33	CTCF	chr8:19615267-19615618	MCF-7	breast:	n/a	chr8:19615513-19615526
34	CTCF	chr8:19615360-19615510	HCPEpiC	choroid plexus:	n/a	n/a
35	CTCF	chr8:19616157-19616372	GM12892	blood:	n/a	n/a
36	CTCF	chr8:19616140-19616290	HCM	heart:	n/a	n/a
37	CTCF	chr8:19616142-19616337	K562	blood:	n/a	n/a
38	CTCF	chr8:19615294-19615562	HepG2	liver:	n/a	chr8:19615513-19615526
39	CTCF	chr8:19616200-19616350	GM12873	blood:	n/a	n/a
40	CTCF	chr8:19616100-19616250	HFF-Myc	foreskin:	n/a	n/a
41	CTCF	chr8:19616160-19616310	NB4	blood:	n/a	n/a
42	CTCF	chr8:19615400-19615550	A549	lung:	n/a	chr8:19615513-19615526
43	CTCF	chr8:19615360-19615510	NHLF	lung:	n/a	n/a
44	CTCF	chr8:19615400-19615550	GM12865	blood:	n/a	chr8:19615513-19615526
45	CTCF	chr8:19616120-19616270	HRE	kidney:	n/a	n/a
46	CTCF	chr8:19616046-19616373	A549	lung:	n/a	n/a
47	CTCF	chr8:19616200-19616350	GM12864	blood:	n/a	n/a
48	CTCF	chr8:19616120-19616270	Caco-2	colon:	n/a	n/a
49	CTCF	chr8:19615354-19615544	NHEK	skin:	n/a	chr8:19615513-19615526
50	CTCF	chr8:19616160-19616310	HMF	breast:	n/a	n/a

(count:244 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr8:19615514-19615564	HRE	kidney:	n/a
2	chr8:19615514-19615564	ProgFib	skin:	n/a
3	chr8:19617535-19617585	HCT-116	colon:	n/a
4	chr8:19615741-19615791	BE2_C	brain:	n/a
5	chr8:19615514-19615564	HCF	heart:	n/a
6	chr8:19615514-19615564	GM06990	blood:	n/a
7	chr8:19615741-19615791	NHDF-neo	bronchial:	n/a
8	chr8:19617535-19617585	HEK293	kidney:	embryo
9	chr8:19617535-19617585	Caco-2	colon:	n/a
10	chr8:19616280-19616330	AG09319	gingival:	n/a
11	chr8:19617535-19617585	HCM	heart:	n/a
12	chr8:19615514-19615564	PANC-1	pancreas:	n/a
13	chr8:19617535-19617585	GM19239	blood:	n/a
14	chr8:19615514-19615564	SAEC	small airway:	n/a
15	chr8:19615741-19615791	HepG2	liver:	n/a
16	chr8:19617535-19617585	SK-N-SH	brain:	n/a
17	chr8:19617535-19617585	GM12878	blood:	n/a
18	chr8:19615514-19615564	SK-N-MC	brain:	n/a
19	chr8:19617535-19617585	HRPEpiC	eye:	n/a
20	chr8:19615514-19615564	NHDF-neo	bronchial:	n/a
21	chr8:19615514-19615564	AG09319	gingival:	n/a
22	chr8:19616280-19616330	AG04450	lung:	fetal
23	chr8:19615741-19615791	AG04450	lung:	fetal
24	chr8:19617535-19617585	MCF10A-Er-Src	breast:	n/a
25	chr8:19615741-19615791	NT2-D1	testis:	n/a
26	chr8:19615741-19615791	GM12878	blood:	n/a
27	chr8:19615514-19615564	CMK	blood:	n/a
28	chr8:19616280-19616330	GM12892	blood:	n/a
29	chr8:19617535-19617585	HepG2	liver:	n/a
30	chr8:19615514-19615564	AG04450	lung:	fetal
31	chr8:19616280-19616330	HCT-116	colon:	n/a
32	chr8:19615514-19615564	U87	brain:	n/a
33	chr8:19615741-19615791	AoSMC	blood vessel:	n/a
34	chr8:19615514-19615564	PrEC	prostate:	n/a
35	chr8:19615741-19615791	SK-N-SH_RA	brain:	n/a
36	chr8:19615514-19615564	SKMC	muscle:	n/a
37	chr8:19615514-19615564	Jurkat	blood:	n/a
38	chr8:19617535-19617585	SK-N-MC	brain:	n/a
39	chr8:19615741-19615791	HMEC	breast:	n/a
40	chr8:19615741-19615791	Hela-S3	cervix:	n/a
41	chr8:19615514-19615564	Hepatocyte	liver:	n/a
42	chr8:19615741-19615791	PANC-1	pancreas:	n/a
43	chr8:19615514-19615564	GM12891	blood:	n/a
44	chr8:19617535-19617585	NB4	blood:	n/a
45	chr8:19615514-19615564	HEEpiC	esophagus:	n/a
46	chr8:19616280-19616330	PANC-1	pancreas:	n/a
47	chr8:19617535-19617585	BE2_C	brain:	n/a
48	chr8:19615514-19615564	HPAEpiC	pulmonary alveolar:	n/a
49	chr8:19617535-19617585	HEEpiC	esophagus:	n/a
50	chr8:19617535-19617585	AG10803	skin:	n/a

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:19265621..19266481-chr8:19615795..19616681,3	MCF-7	breast:
2	chr8:19316428..19318779-chr8:19615686..19617194,2	MCF-7	breast:
3	chr8:19534323..19537317-chr8:19613839..19616648,2	MCF-7	breast:
4	chr8:19497421..19499586-chr8:19613571..19616001,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-INTS10-1	chr8:19616323-19616427	XLOC_006732

No data

Variant related genes	Relation type
CSGALNACT1	TF binding region
CSGALNACT1	CpG island
ENSG00000147408	chromatin interactions
ENSG00000253270	chromatin interactions
TGFBR2	miRNA target sites

Extended variants
information (count: 71 )
Associated
traits (count: 115 )

Variant overlapped rSNPs/rCNVs (count:71 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs565167563	chr8:19615551-19615552	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
2	rs527663519	chr8:19615563-19615564	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
3	rs547445187	chr8:19615644-19615645	Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
4	rs530089895	chr8:19615696-19615697	Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
5	rs184755275	chr8:19615709-19615710	Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
6	rs138176600	chr8:19615723-19615724	Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
7	rs117803783	chr8:19615748-19615749	Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
8	rs569506214	chr8:19615761-19615762	Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
9	rs559662848	chr8:19615844-19615845	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
10	rs373118232	chr8:19615863-19615864	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
11	rs7835546	chr8:19615864-19615865	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs189518994	chr8:19615915-19615916	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
13	rs534629716	chr8:19615942-19615943	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
14	rs34420173	chr8:19615944-19615945	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
15	rs554230436	chr8:19616003-19616004	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs574392092	chr8:19616017-19616018	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs536940290	chr8:19616019-19616020	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs556832796	chr8:19616089-19616090	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs140910765	chr8:19616112-19616113	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs34872577	chr8:19616150-19616151	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs576692606	chr8:19616165-19616166	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs545196782	chr8:19616236-19616237	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs551754014	chr8:19616251-19616252	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs4921674	chr8:19616281-19616282	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs181584068	chr8:19616304-19616305	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs531047797	chr8:19616336-19616337	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
27	rs372812570	chr8:19616381-19616382	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
28	rs368842217	chr8:19616394-19616395	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
29	rs186047147	chr8:19616397-19616398	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
30	rs558558784	chr8:19616422-19616423	Weak transcription Active TSS Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
31	rs529977504	chr8:19616424-19616425	Weak transcription Active TSS Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
32	rs549650897	chr8:19616441-19616442	Weak transcription Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs563172428	chr8:19616459-19616460	Weak transcription Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs570797063	chr8:19616475-19616476	Weak transcription Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs189101687	chr8:19616526-19616527	Weak transcription Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs181767017	chr8:19616527-19616528	Weak transcription Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs371549033	chr8:19616541-19616542	Weak transcription Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
38	rs4921675	chr8:19616581-19616582	Weak transcription Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs4921676	chr8:19616589-19616590	Weak transcription Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
40	rs548212549	chr8:19616679-19616680	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs371794547	chr8:19616694-19616695	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs75485747	chr8:19616696-19616697	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs376551235	chr8:19616735-19616736	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs536979006	chr8:19616770-19616771	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs574980665	chr8:19616881-19616882	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs556871528	chr8:19616907-19616908	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs576780650	chr8:19616908-19616909	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs539236185	chr8:19616916-19616917	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs186502756	chr8:19616919-19616920	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs80231325	chr8:19616925-19616926	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:115)

Disease	PMID	Source
Multiple myeloma	16616336	CNVD
Hepatocellular carcinoma	22174799	CNVD
Heart disease	21282601	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Prostate cancer	16573809	CNVD
T-cell lymphomas	19863542	CNVD
Ovarian cancer	22174824	CNVD
Colorectal cancer	21297112	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Salivary gland tumor	18059337	CNVD
Breast cancer	17133270	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Breast cancer	17393978	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Breast cancer	20837533	CNVD
Squamous cell cancer	21044232	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	22429812	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Colorectal cancer	20709793	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Basal cell lymphoma	21115979	CNVD
Breast cancer	21264507	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Oral cancer	21386901	CNVD
Prostate cancer	21088497	CNVD
Prostate cancer	21965145	CNVD
Breast cancer	20940404	CNVD
Colorectal cancer	19359472	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Gastric cancer	17167181	CNVD
Prostate cancer	16705090	CNVD
8p-syndrome	17576883	CNVD
Colorectal cancer	16272173	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Prostate cancer	17245344	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Cancer	16751803	CNVD
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Breast cancer	21785460	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21509527	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	16608533	CNVD
Seminomas	18059402	CNVD
Lung cancer	18438408	CNVD
Medulloblastoma	16783165	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Myxofibrosarcoma	16751306	CNVD
Immune disease	21572526	CNVD
Non-small cell lung cancer	21829676	CNVD
Ovarian neoplasms	16753589	CNVD
Kallmann Syndrome 2	22470819	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Epilepsy	22083797	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Myelofibrosis	22110671	CNVD
Prostate cancer	16461572	CNVD
Breast cancer	17603634	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Bladder cancer	21909424	CNVD
Multiple myeloma	17550852	CNVD
Pancreatic cancer	21811587	CNVD
Multiple myeloma	16461302	CNVD
Developmental delay	21373258	CNVD
Thyroid cancer	19087340	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	21364760	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Cancer	18840272	CNVD
Breast cancer	19602461	CNVD
Osteosarcoma	19286668	CNVD
Prostate cancer	19242612	CNVD
Prostate cancer	19258508	CNVD
small cell lung cancer	20016488	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Gastric adenocarcinoma	19115996	CNVD
Colorectal cancer	19455253	CNVD
Lung adenocarcinoma	21935476	CNVD
Melanoma	20688739	CNVD

Chromatin state (count:180 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:19612600-19615600	Active TSS	A549	lung
2	chr8:19613000-19616000	Active TSS	Brain Hippocampus Middle	brain
3	chr8:19613200-19615800	Active TSS	Right Atrium	heart
4	chr8:19613200-19616400	Active TSS	Brain Substantia Nigra	brain
5	chr8:19613400-19615600	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr8:19613400-19615600	Active TSS	Left Ventricle	heart
7	chr8:19613400-19615600	Active TSS	Right Ventricle	heart
8	chr8:19613400-19615800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
9	chr8:19613400-19615800	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
10	chr8:19613600-19615800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr8:19613600-19615800	Active TSS	Duodenum Smooth Muscle	Duodenum
12	chr8:19613600-19615800	Active TSS	Osteobl	bone
13	chr8:19613800-19615600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
14	chr8:19613800-19615600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr8:19613800-19615600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
16	chr8:19613800-19615600	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
17	chr8:19613800-19615800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
18	chr8:19613800-19615800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
19	chr8:19613800-19615800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
20	chr8:19613800-19615800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
21	chr8:19614000-19615600	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr8:19614000-19615600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr8:19614000-19615600	Active TSS	Colon Smooth Muscle	Colon
24	chr8:19614000-19615600	Active TSS	Fetal Kidney	kidney
25	chr8:19614000-19615600	Active TSS	Lung	lung
26	chr8:19614000-19615800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr8:19614000-19615800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
28	chr8:19614000-19616000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
29	chr8:19614200-19615600	Bivalent/Poised TSS	HepG2	liver
30	chr8:19614200-19615600	Bivalent/Poised TSS	HSMM	muscle
31	chr8:19614200-19615800	Active TSS	Brain Inferior Temporal Lobe	brain
32	chr8:19614400-19615600	Active TSS	Brain Angular Gyrus	brain
33	chr8:19614600-19615800	Active TSS	Primary hematopoietic stem cells	blood
34	chr8:19614600-19616000	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
35	chr8:19615000-19615600	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr8:19615000-19615600	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr8:19615000-19615600	Flanking Bivalent TSS/Enh	Primary Natural Killer cells fromperipheralblood	blood
38	chr8:19615000-19615600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
39	chr8:19615000-19615600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr8:19615000-19615600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr8:19615000-19615600	Flanking Bivalent TSS/Enh	Liver	Liver
42	chr8:19615000-19615600	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
43	chr8:19615000-19615600	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
44	chr8:19615000-19615600	Bivalent/Poised TSS	Fetal Lung	lung
45	chr8:19615000-19615600	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
46	chr8:19615000-19615600	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
47	chr8:19615000-19615600	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
48	chr8:19615000-19615600	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
49	chr8:19615000-19615800	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
50	chr8:19615000-19615800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links