Variant report

Variant	esv3481792
Chromosome Location	chr9:140734556-140738104
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:140732797..140735433-chr9:140735710..140738705,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000207693	chromatin interactions

Extended variants
information (count: 240 )
Associated
traits (count: 19 )

Variant overlapped rSNPs/rCNVs (count:240 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs561989689	chr9:140734563-140734564	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs150546773	chr9:140734575-140734576	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs138451399	chr9:140734579-140734580	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs186714036	chr9:140734643-140734644	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs533410662	chr9:140734644-140734645	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs11137256	chr9:140734662-140734663	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs201881209	chr9:140734734-140734735	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs529985238	chr9:140734767-140734768	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs549993088	chr9:140734773-140734774	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs191090863	chr9:140734776-140734777	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs372104339	chr9:140734878-140734879	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs531351421	chr9:140734894-140734895	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs552336341	chr9:140734913-140734914	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs183604929	chr9:140734929-140734930	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs562683113	chr9:140734953-140734954	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs531628630	chr9:140734954-140734955	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs548134892	chr9:140734958-140734959	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs568070501	chr9:140734964-140734965	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs189471942	chr9:140734965-140734966	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs9410051	chr9:140734966-140734967	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs539730043	chr9:140734970-140734971	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs555758104	chr9:140735021-140735022	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs576303207	chr9:140735028-140735029	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs541999919	chr9:140735042-140735043	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs547536823	chr9:140735043-140735044	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs570538803	chr9:140735049-140735050	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs182323181	chr9:140735053-140735054	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs572405214	chr9:140735054-140735055	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs538896929	chr9:140735058-140735059	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs185279497	chr9:140735059-140735060	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs117501104	chr9:140735083-140735084	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs147342207	chr9:140735084-140735085	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs140210167	chr9:140735089-140735090	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs145629151	chr9:140735093-140735094	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs563578940	chr9:140735094-140735095	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs529498274	chr9:140735131-140735132	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs4876904	chr9:140735138-140735139	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs568169598	chr9:140735165-140735166	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs78478370	chr9:140735218-140735219	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
40	rs190127268	chr9:140735246-140735247	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
41	rs369109268	chr9:140735280-140735281	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
42	rs554809549	chr9:140735357-140735358	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
43	rs570442290	chr9:140735360-140735361	Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
44	rs539792629	chr9:140735422-140735423	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs373347043	chr9:140735473-140735474	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs556489744	chr9:140735479-140735480	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs141772073	chr9:140735528-140735529	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs116833652	chr9:140735534-140735535	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs73581200	chr9:140735541-140735542	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs138171336	chr9:140735548-140735549	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:19)

Disease	PMID	Source
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Cardiac fibroma	18329553	CNVD
Lung cancer	19147751	CNVD
Cervical cancer	17311676	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Chordoma	18071362	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Sudden cardiac death	19188705	CNVD
Myoepithelioma	18604193	CNVD
Tuberous sclerosis	19566914	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Mantle cell lymphoma	19029149	CNVD

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:140713000-140747200	Weak transcription	Stomach Mucosa	stomach
2	chr9:140729200-140734600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr9:140730200-140736800	Weak transcription	HSMMtube	muscle
4	chr9:140731200-140734600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:140731200-140734800	Weak transcription	Brain Angular Gyrus	brain
6	chr9:140731200-140735600	Weak transcription	Small Intestine	intestine
7	chr9:140731400-140734600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr9:140731400-140735000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr9:140731400-140735400	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr9:140731600-140735600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr9:140731800-140734800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr9:140732000-140734600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr9:140732000-140734600	Weak transcription	Left Ventricle	heart
14	chr9:140732000-140735400	Weak transcription	Primary T cells from cord blood	blood
15	chr9:140732000-140741200	Weak transcription	Brain Hippocampus Middle	brain
16	chr9:140732400-140734600	Weak transcription	Right Ventricle	heart
17	chr9:140732800-140734800	Weak transcription	Fetal Intestine Small	intestine
18	chr9:140733200-140734600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr9:140733200-140734800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr9:140733200-140734800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr9:140733200-140734800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr9:140733200-140734800	Weak transcription	Duodenum Mucosa	Duodenum
23	chr9:140733200-140734800	Weak transcription	Spleen	Spleen
24	chr9:140733200-140735200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr9:140733200-140735600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr9:140733400-140734800	Weak transcription	Brain Germinal Matrix	brain
27	chr9:140733400-140735000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr9:140735200-140735400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links