Variant report

Variant	esv3482562
Chromosome Location	chr9:100561869-100562782
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:100560448..100563206-chr9:100564370..100567117,3	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 73 )

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs77662575	chr9:100561891-100561892	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs192311955	chr9:100561906-100561907	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs374723811	chr9:100561913-100561914	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs545700532	chr9:100561962-100561963	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs557899657	chr9:100561979-100561980	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs113331077	chr9:100561999-100562000	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs189147161	chr9:100562053-100562054	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs561714999	chr9:100562095-100562096	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs147584830	chr9:100562128-100562129	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs374374609	chr9:100562132-100562133	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs76566040	chr9:100562200-100562201	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs142788439	chr9:100562257-100562258	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs71501831	chr9:100562296-100562297	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs563810019	chr9:100562330-100562331	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs368984169	chr9:100562353-100562354	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs531210945	chr9:100562356-100562357	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs181085391	chr9:100562440-100562441	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs570987101	chr9:100562469-100562470	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs184670768	chr9:100562506-100562507	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs373564573	chr9:100562591-100562592	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs577027649	chr9:100562632-100562633	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs10983806	chr9:100562635-100562636	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:73)

Disease	PMID	Source
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Leukemia	18688285	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute myeloid leukemia	21251322	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral cancer	21386901	CNVD
Bipolar disorder	18458673	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Gastric cancer	17908304	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Biliary cancer	19435499	CNVD
small cell lung cancer	20016488	CNVD
Intracranial aneurysm	16715129	CNVD
Cardiac fibroma	18329553	CNVD
Breast cancer	17133270	CNVD
Basal cell nevus syndrome	21572526	CNVD
Mental retardation	19951919	CNVD
Retinoblastoma	22278416	CNVD
9q22.3 microdeletion syndrome	22283845	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
overgrowth syndrome	16570072	CNVD
Neurodevelopmental disorder	22521361	CNVD
Nicotine dependence	17160897	CNVD
Mantle cell lymphoma	19029149	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100554400-100563600	Weak transcription	HMEC	breast
2	chr9:100561400-100564000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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