Variant report
| Variant | esv3483215 |
|---|---|
| Chromosome Location | chr9:115777509-115782385 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CTCF | chr9:115781394-115781467 | Kidney_OC | kidney: | n/a | n/a |
| 2 | POLR2A | chr9:115779802-115779997 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ZNF883 | TF binding region |
Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs185981838 | chr9:115780201-115780202 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs528131382 | chr9:115780224-115780225 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs7021392 | chr9:115780225-115780226 | ZNF genes & repeats | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 4 | rs117646410 | chr9:115780240-115780241 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs144309760 | chr9:115780259-115780260 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs372334978 | chr9:115780309-115780310 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs191122828 | chr9:115780321-115780322 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs74307755 | chr9:115780329-115780330 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs147787419 | chr9:115780341-115780342 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs183431836 | chr9:115780394-115780395 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs542090750 | chr9:115780416-115780417 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs139551025 | chr9:115780450-115780451 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs527273920 | chr9:115780481-115780482 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 14 | rs113982818 | chr9:115780503-115780504 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 15 | rs149832244 | chr9:115780506-115780507 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 16 | rs139464121 | chr9:115780558-115780559 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 17 | rs374152711 | chr9:115780559-115780560 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 18 | rs145804830 | chr9:115780566-115780567 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 19 | rs532826364 | chr9:115780578-115780579 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 20 | rs369745855 | chr9:115780581-115780582 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 21 | rs549489528 | chr9:115780589-115780590 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:54)
| Disease | PMID | Source |
|---|---|---|
| Acute lymphoblastic leukemia | 22237106 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Chordoma | 21602918 | CNVD |
| Renal cell carcinoma | 18592004 | CNVD |
| Developmental delay | 19490664 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| microdeletion syndrome | 16199537 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Urothelial carcinoma | 21177765 | CNVD |
| Renal cell carcinoma | 21668985 | CNVD |
| Autism | 22495311 | CNVD |
| Oral squamous cell carcinoma | 17134496 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| Cancer | 16751803 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| lymphocytic leukemia | 21291569 | CNVD |
| Leukemia | 17361228 | CNVD |
| Monoclonal gammopathy of undetermined significance | 17077331 | CNVD |
| Glioblastoma | 16823260 | CNVD |
| Non-small cell lung cancer | 21044232 | CNVD |
| Brain cancer | 20823417 | CNVD |
| Acute lymphoblastic leukemia | 21390130 | CNVD |
| Astrocytoma | 17387387 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Renal cell carcinoma | 19461508 | CNVD |
| Neuroblastoma | 18923191 | CNVD |
| Acute lymphoblastic leukemia | 20067559 | CNVD |
| Heart disease | 21282601 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Gastrointestinal stromal cancer | 16982739 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Acute myeloid leukemia | 20729466 | CNVD |
| Oral cancer | 21386901 | CNVD |
| Prostate cancer | 18632612 | CNVD |
| Basal cell lymphoma | 16317097 | CNVD |
| Diffuse large b-cell lymphoma | 16317097 | CNVD |
| Gastric cancer | 17908304 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Cardiac fibroma | 18329553 | CNVD |
| Acute lymphoblastic leukemia | 21980252 | CNVD |
| Testicular germ cell tumor | 18059402 | CNVD |
| Breast cancer | 21364760 | CNVD |
| Developmental delay | 21147756 | CNVD |
| Lung cancer | 19147751 | CNVD |
| Acute lymphoblastic leukemia | 17443227 | CNVD |
| Melanoma | 18172304 | CNVD |
| Colorectal cancer | 16272173 | CNVD |
| Breast cancer | 22522925 | CNVD |
| Melanoma | 20877625 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:115780200-115780600 | ZNF genes & repeats | Liver | Liver |
