Variant report

Variant	esv3483507
Chromosome Location	chr10:26608890-26611141
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:26608523..26610420-chr10:26610940..26613884,2	MCF-7	breast:
2	chr10:26608523..26610420-chr10:26610940..26613884,2	MCF-7	breast:

Extended variants
information (count: 101 )
Associated
traits (count: 42 )

Variant overlapped rSNPs/rCNVs (count:101 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs534509373	chr10:26608895-26608896	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs528636927	chr10:26608899-26608900	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs139152630	chr10:26608927-26608928	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs577737238	chr10:26608933-26608934	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs112353918	chr10:26608940-26608941	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs149918872	chr10:26608974-26608975	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs144297655	chr10:26608978-26608979	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs554128383	chr10:26608982-26608983	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs74507666	chr10:26608996-26608997	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs546745044	chr10:26609062-26609063	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs566670057	chr10:26609066-26609067	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs538411538	chr10:26609068-26609069	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs148734580	chr10:26609101-26609102	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs34526122	chr10:26609111-26609112	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs568844177	chr10:26609117-26609118	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs74126454	chr10:26609131-26609132	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs554163646	chr10:26609133-26609134	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs181009229	chr10:26609171-26609172	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs74126455	chr10:26609251-26609252	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs143678880	chr10:26609348-26609349	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs4749113	chr10:26609379-26609380	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs564597002	chr10:26609402-26609403	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs115877745	chr10:26609409-26609410	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs150707919	chr10:26609441-26609442	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs374527434	chr10:26609452-26609453	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs368823712	chr10:26609486-26609487	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs146795183	chr10:26609511-26609512	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs185126773	chr10:26609520-26609521	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs544894505	chr10:26609563-26609564	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs375802113	chr10:26609602-26609603	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs561352659	chr10:26609664-26609665	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs79071662	chr10:26609681-26609682	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs575123461	chr10:26609693-26609694	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs373529647	chr10:26609703-26609704	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs79775598	chr10:26609706-26609707	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs9417465	chr10:26609715-26609716	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs561206166	chr10:26609717-26609718	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs75871336	chr10:26609730-26609731	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs189204322	chr10:26609740-26609741	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs77989808	chr10:26609756-26609757	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs530236393	chr10:26609782-26609783	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs34632547	chr10:26609821-26609822	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs537763415	chr10:26609828-26609829	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs554400906	chr10:26609844-26609845	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs111487458	chr10:26609845-26609846	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs533598926	chr10:26609855-26609856	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs540414377	chr10:26609914-26609915	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs553719203	chr10:26609915-26609916	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs560233102	chr10:26609976-26609977	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs78603683	chr10:26609980-26609981	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:42)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Behavioral abnormalities	21522184	CNVD
Dysmorphic features	21522184	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Myelofibrosis	22110671	CNVD
Autism	21439084	CNVD
Maculopathy	20981449	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Adrenocortical carcinoma	18281524	CNVD
Breast cancer	21364760	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26608200-26609000	Enhancers	Pancreas	Pancrea
2	chr10:26609000-26610600	Weak transcription	Pancreas	Pancrea
3	chr10:26610600-26610800	Enhancers	Pancreas	Pancrea
4	chr10:26610800-26612600	Weak transcription	Pancreas	Pancrea

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