Variant report

Variant	esv3483593
Chromosome Location	chr9:140737531-140742829
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:140732797..140735433-chr9:140735710..140738705,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000207693	chromatin interactions

Extended variants
information (count: 378 )
Associated
traits (count: 19 )

Variant overlapped rSNPs/rCNVs (count:378 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs567189895	chr9:140737535-140737536	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs377361616	chr9:140737536-140737537	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs559239237	chr9:140737543-140737544	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs575894934	chr9:140737548-140737549	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs544748640	chr9:140737555-140737556	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs556781984	chr9:140737558-140737559	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs112477415	chr9:140737567-140737568	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs563143367	chr9:140737568-140737569	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs573651564	chr9:140737574-140737575	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs375411683	chr9:140737612-140737613	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs187305013	chr9:140737623-140737624	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs558907673	chr9:140737637-140737638	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs377644998	chr9:140737639-140737640	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs35782625	chr9:140737666-140737667	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs113284925	chr9:140737668-140737669	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs201495305	chr9:140737674-140737675	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs112762743	chr9:140737675-140737676	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs35543893	chr9:140737676-140737677	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs146572882	chr9:140737685-140737686	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs564779998	chr9:140737686-140737687	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs58497182	chr9:140737690-140737691	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs373879473	chr9:140737726-140737727	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs190214791	chr9:140737739-140737740	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs182430423	chr9:140737740-140737741	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs567678850	chr9:140737749-140737750	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs542326428	chr9:140737781-140737782	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs111393513	chr9:140737813-140737814	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs118000764	chr9:140737823-140737824	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs140045519	chr9:140737824-140737825	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs143587028	chr9:140737834-140737835	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs569532620	chr9:140737841-140737842	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs186703736	chr9:140737923-140737924	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs573669455	chr9:140737945-140737946	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs192552382	chr9:140737986-140737987	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs151011501	chr9:140737991-140737992	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs113291564	chr9:140738036-140738037	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs7390474	chr9:140738043-140738044	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs572501044	chr9:140738044-140738045	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs550402614	chr9:140738075-140738076	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs367821251	chr9:140738110-140738111	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs564843561	chr9:140738111-140738112	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs575459233	chr9:140738138-140738139	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs7389498	chr9:140738231-140738232	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
44	rs118035276	chr9:140738275-140738276	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs375002302	chr9:140738297-140738298	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs7390989	chr9:140738306-140738307	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
47	rs371148182	chr9:140738324-140738325	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs183905349	chr9:140738325-140738326	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs560526666	chr9:140738370-140738371	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs76047384	chr9:140738371-140738372	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:19)

Disease	PMID	Source
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Cardiac fibroma	18329553	CNVD
Lung cancer	19147751	CNVD
Cervical cancer	17311676	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Chordoma	18071362	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Sudden cardiac death	19188705	CNVD
Myoepithelioma	18604193	CNVD
Tuberous sclerosis	19566914	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Mantle cell lymphoma	19029149	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:140713000-140747200	Weak transcription	Stomach Mucosa	stomach
2	chr9:140732000-140741200	Weak transcription	Brain Hippocampus Middle	brain

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