Variant report

Variant	esv3488701
Chromosome Location	chr10:383303-383819
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:372012..377385-chr10:378663..387362,13	MCF-7	breast:
2	chr10:343153..345716-chr10:383491..385119,2	MCF-7	breast:
3	chr10:378453..381890-chr10:383620..386364,3	MCF-7	breast:
4	chr10:383639..386364-chr17:57922141..57924204,2	MCF-7	breast:
5	chr10:373968..376079-chr10:381911..385076,3	MCF-7	breast:
6	chr10:311595..313288-chr10:383819..386750,2	MCF-7	breast:
7	chr10:180432..181985-chr10:381159..384205,3	MCF-7	breast:
8	chr10:352835..354904-chr10:383242..385492,2	MCF-7	breast:
9	chr10:382178..386587-chr10:393776..396360,3	MCF-7	breast:
10	chr10:382961..385780-chr10:450030..452279,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZMYND11-2	chr10:383723-383927	NONHSAT010856

No data

Variant related genes	Relation type
ENSG00000015171	chromatin interactions
ENSG00000151240	chromatin interactions

Extended variants
information (count: 59 )
Associated
traits (count: 53 )

Variant overlapped rSNPs/rCNVs (count:59 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs550539608	chr10:383314-383315	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
2	rs570340215	chr10:383324-383325	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs536125225	chr10:383332-383333	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs56154117	chr10:383343-383344	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs565891054	chr10:383344-383345	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs114903536	chr10:383345-383346	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs535130790	chr10:383352-383353	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs557962056	chr10:383368-383369	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs62638891	chr10:383376-383377	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs577016342	chr10:383380-383381	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs111170431	chr10:383389-383390	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs202221102	chr10:383390-383391	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs545572294	chr10:383392-383393	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs62644036	chr10:383401-383402	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs62638892	chr10:383410-383411	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs62638890	chr10:383412-383413	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs62638894	chr10:383415-383416	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs62644037	chr10:383421-383422	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs556072898	chr10:383422-383423	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs371093322	chr10:383450-383451	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs370134505	chr10:383463-383464	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs575947927	chr10:383466-383467	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs373844306	chr10:383467-383468	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs183784206	chr10:383488-383489	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs561726466	chr10:383521-383522	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs547049566	chr10:383522-383523	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs527251089	chr10:383528-383529	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs541160070	chr10:383537-383538	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs200016231	chr10:383549-383550	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs564019985	chr10:383555-383556	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs533591859	chr10:383566-383567	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs550379078	chr10:383567-383568	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs367976921	chr10:383573-383574	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs370523475	chr10:383589-383590	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs187506159	chr10:383595-383596	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs529618770	chr10:383607-383608	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs374042344	chr10:383608-383609	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
38	rs368215858	chr10:383640-383641	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
39	rs111164616	chr10:383646-383647	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
40	rs566107418	chr10:383684-383685	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
41	rs61727500	chr10:383685-383686	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
42	rs61721829	chr10:383692-383693	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
43	rs62636713	chr10:383694-383695	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
44	rs562559020	chr10:383708-383709	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
45	rs12773603	chr10:383714-383715	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs148736309	chr10:383733-383734	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
47	rs60711224	chr10:383738-383739	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
48	rs62639299	chr10:383747-383748	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
49	rs558259997	chr10:383754-383755	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
50	rs116138876	chr10:383759-383760	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:53)

Disease	PMID	Source
Cancer	20164920	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	20409316	CNVD
Gastric adenocarcinoma	19115996	CNVD
Pilocytic astrocytoma	18622384	CNVD
Pilomyxoid astrocytoma	18622384	CNVD
Breast cancer	17133270	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Cancer	21129771	CNVD
Sudden cardiac death	19188705	CNVD
Digeorge syndrome	22283845	CNVD
Colorectal cancer	20709793	CNVD
Wilms tumour	19047088	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Barakat syndrome	22470819	CNVD
Melanoma	18172304	CNVD
Ovarian cancer	21720365	CNVD
Autism	18414403	CNVD
Malignant melanoma	18718029	CNVD
Breast cancer	22032731	CNVD
Medulloblastoma	16783165	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Melanoma	17363583	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21785460	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21509527	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Glioblastoma multiforme	21525872	CNVD
Breast cancer	22522925	CNVD
Breast cancer	21858162	CNVD

Chromatin state (count:130 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:370400-418200	Weak transcription	Small Intestine	intestine
2	chr10:372800-386800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr10:375600-386600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr10:375800-384600	Weak transcription	Colonic Mucosa	Colon
5	chr10:375800-402200	Weak transcription	Psoas Muscle	Psoas
6	chr10:375800-418800	Weak transcription	Right Atrium	heart
7	chr10:375800-419800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr10:376200-383400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr10:379400-384200	Strong transcription	Stomach Smooth Muscle	stomach
10	chr10:379600-384600	Weak transcription	Primary B cells from cord blood	blood
11	chr10:379600-384800	Weak transcription	Thymus	Thymus
12	chr10:379800-393600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr10:380000-384400	Weak transcription	Dnd41	blood
14	chr10:380200-388600	Weak transcription	Primary B cells from peripheral blood	blood
15	chr10:380200-389000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr10:380200-389600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr10:380200-390400	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr10:380200-397400	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr10:380200-397400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr10:380200-423200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr10:380400-397400	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr10:380800-384400	Strong transcription	Colon Smooth Muscle	Colon
23	chr10:380800-385600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr10:381000-391400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr10:381000-391600	Strong transcription	Brain Germinal Matrix	brain
26	chr10:381000-397400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr10:381200-384000	Strong transcription	Brain Hippocampus Middle	brain
28	chr10:381200-384000	Strong transcription	Brain Substantia Nigra	brain
29	chr10:381200-384200	Strong transcription	Brain Angular Gyrus	brain
30	chr10:381200-384600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr10:381200-384600	Strong transcription	Fetal Muscle Leg	muscle
32	chr10:381200-391400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr10:381200-391400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr10:381200-391600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr10:381200-391600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr10:381400-383400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr10:381400-384200	Strong transcription	Fetal Intestine Small	intestine
38	chr10:381400-384400	Strong transcription	Adipose Nuclei	Adipose
39	chr10:381400-384400	Strong transcription	Brain Anterior Caudate	brain
40	chr10:381400-384400	Strong transcription	Brain Inferior Temporal Lobe	brain
41	chr10:381400-384600	Strong transcription	Fetal Muscle Trunk	muscle
42	chr10:381400-384600	Strong transcription	Fetal Stomach	stomach
43	chr10:381400-391200	Strong transcription	Skeletal Muscle Female	skeletal muscle
44	chr10:381400-391600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr10:381600-384000	Strong transcription	HSMM	muscle
46	chr10:381600-384400	Strong transcription	Brain Cingulate Gyrus	brain
47	chr10:381600-384800	Strong transcription	Fetal Lung	lung
48	chr10:381600-388000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr10:381800-383800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr10:381800-391200	Strong transcription	Placenta	Placenta

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