Variant report

Variant	esv3489576
Chromosome Location	chr19:53081090-53084588
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:53073084..53075502-chr19:53084084..53086911,2	K562	blood:
2	chr19:53072947..53075360-chr19:53081572..53083842,2	K562	blood:

Variant related genes	Relation type
ENSG00000167562	chromatin interactions

Extended variants
information (count: 193 )
Associated
traits (count: 66 )

Variant overlapped rSNPs/rCNVs (count:193 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs369265299	chr19:53081098-53081099	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs375010819	chr19:53081109-53081110	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs559896820	chr19:53081119-53081120	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs377172472	chr19:53081120-53081121	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs141865875	chr19:53081125-53081126	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs113917100	chr19:53081138-53081139	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs531613479	chr19:53081148-53081149	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs2633504	chr19:53081163-53081164	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs550036792	chr19:53081165-53081166	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs568228987	chr19:53081176-53081177	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs372426740	chr19:53081184-53081185	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs555001168	chr19:53081192-53081193	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs566761490	chr19:53081230-53081231	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs534240159	chr19:53081232-53081233	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs558525766	chr19:53081234-53081235	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs183351381	chr19:53081262-53081263	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs544467541	chr19:53081293-53081294	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs802864	chr19:53081367-53081368	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs10460183	chr19:53081375-53081376	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs541566920	chr19:53081431-53081432	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs34738605	chr19:53081455-53081456	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs191057450	chr19:53081461-53081462	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs545810405	chr19:53081467-53081468	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs564056315	chr19:53081485-53081486	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs71358886	chr19:53081496-53081497	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs373607896	chr19:53081502-53081503	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs58385761	chr19:53081531-53081532	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs374779527	chr19:53081533-53081534	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs182045667	chr19:53081550-53081551	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs561867590	chr19:53081554-53081555	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs529046949	chr19:53081557-53081558	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs560247629	chr19:53081604-53081605	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs567003157	chr19:53081613-53081614	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs534015124	chr19:53081620-53081621	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs552167555	chr19:53081621-53081622	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs570482460	chr19:53081631-53081632	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs149748236	chr19:53081638-53081639	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs62117238	chr19:53081658-53081659	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs187929227	chr19:53081699-53081700	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs12971607	chr19:53081735-53081736	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs554050076	chr19:53081736-53081737	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs192445050	chr19:53081766-53081767	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs570108592	chr19:53081787-53081788	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs545880990	chr19:53081811-53081812	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs183011530	chr19:53081813-53081814	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs576060635	chr19:53081876-53081877	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs561310649	chr19:53081880-53081881	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs73580214	chr19:53081890-53081891	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs562006723	chr19:53081898-53081899	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs188584393	chr19:53081979-53081980	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:66)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Ductal carcinoma	22052326	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	16864856	CNVD
Bladder cancer	21909424	CNVD
Medulloblastoma	16783165	CNVD
Acute myeloid leukemia	20729466	CNVD
Ovarian cancer	22174824	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Wilms tumour	21544195	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Congenital anomalies of the kidney and urinary tract	18852474	CNVD
Glioblastoma multiforme	17002787	CNVD
Cervical cancer	21062161	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Prostate cancer	16573809	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Myelofibrosis	22110671	CNVD
Gastric adenocarcinoma	19115996	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lung cancer	18438408	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ovarian cancer	21781307	CNVD
Neuroblastoma	20406844	CNVD
Cancer	20164920	CNVD
Melanoma	17363583	CNVD
Breast cancer	21785460	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:253 , 50 per page) page: 1 2 3 4 5 6

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:53074200-53083600	Weak transcription	NH-A	brain
2	chr19:53074200-53087800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr19:53074400-53085800	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
4	chr19:53074600-53084800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr19:53074600-53085800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr19:53074600-53087400	Weak transcription	Fetal Heart	heart
7	chr19:53074600-53088000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr19:53074600-53103600	Weak transcription	Fetal Brain Male	brain
9	chr19:53075000-53082000	Strong transcription	Fetal Muscle Leg	muscle
10	chr19:53075000-53082600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr19:53075200-53081600	Weak transcription	Right Ventricle	heart
12	chr19:53075200-53082200	Strong transcription	HUES6 Cell Line	embryonic stem cell
13	chr19:53075200-53082200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr19:53075400-53081800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr19:53075400-53084400	Strong transcription	Placenta	Placenta
16	chr19:53075400-53089600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr19:53075400-53092200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr19:53075400-53092400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr19:53075400-53092400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
20	chr19:53075600-53083400	Strong transcription	Primary B cells from peripheral blood	blood
21	chr19:53075600-53085600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
22	chr19:53075600-53087000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr19:53075600-53087800	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr19:53075800-53081400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr19:53075800-53082000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr19:53075800-53082400	Strong transcription	Fetal Muscle Trunk	muscle
27	chr19:53075800-53082400	Strong transcription	Left Ventricle	heart
28	chr19:53075800-53082400	Strong transcription	Skeletal Muscle Female	skeletal muscle
29	chr19:53075800-53085000	Strong transcription	Fetal Stomach	stomach
30	chr19:53075800-53085600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr19:53075800-53085600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr19:53075800-53087400	Strong transcription	Osteobl	bone
33	chr19:53075800-53088000	Strong transcription	Rectal Smooth Muscle	rectum
34	chr19:53076000-53082000	Strong transcription	HUES48 Cell Line	embryonic stem cell
35	chr19:53076000-53082200	Strong transcription	Adipose Nuclei	Adipose
36	chr19:53076400-53096000	Strong transcription	Dnd41	blood
37	chr19:53076600-53081600	Strong transcription	Primary T helper cells PMA-I stimulated	--
38	chr19:53077000-53082400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr19:53077600-53088000	Strong transcription	Fetal Brain Female	brain
40	chr19:53077800-53081800	Weak transcription	NHEK	skin
41	chr19:53077800-53082800	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr19:53079000-53081200	Strong transcription	Pancreatic Islets	Pancreatic Islet
43	chr19:53079000-53081400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr19:53079000-53082600	Strong transcription	Duodenum Smooth Muscle	Duodenum
45	chr19:53079000-53083800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
46	chr19:53079200-53082000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
47	chr19:53079200-53082000	Strong transcription	Brain Substantia Nigra	brain
48	chr19:53079200-53082400	Strong transcription	Stomach Smooth Muscle	stomach
49	chr19:53079200-53086400	Strong transcription	Ovary	ovary
50	chr19:53079200-53087400	Strong transcription	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links