Variant report

Variant	esv3489665
Chromosome Location	chr9:22652702-22654800
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 149 )

Variant overlapped rSNPs/rCNVs (count:69 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs150607761	chr9:22652725-22652726	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs543681778	chr9:22652749-22652750	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs535186698	chr9:22652780-22652781	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs139784859	chr9:22652781-22652782	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs368737379	chr9:22652812-22652813	Weak transcription Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs546329299	chr9:22652823-22652824	Weak transcription Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs559837782	chr9:22652825-22652826	Weak transcription Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs528543384	chr9:22652867-22652868	Weak transcription Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs201354359	chr9:22652888-22652889	Weak transcription Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs542197170	chr9:22652895-22652896	Weak transcription Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs561064479	chr9:22652926-22652927	Weak transcription Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs372228555	chr9:22652935-22652936	Weak transcription Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs184199468	chr9:22652943-22652944	Weak transcription Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs144672297	chr9:22652962-22652963	Weak transcription Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs189354568	chr9:22653010-22653011	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs532137958	chr9:22653035-22653036	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs180941057	chr9:22653100-22653101	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs565425915	chr9:22653110-22653111	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs534346775	chr9:22653151-22653152	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs147902174	chr9:22653175-22653176	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs187333337	chr9:22653195-22653196	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs76534317	chr9:22653277-22653278	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs113579671	chr9:22653333-22653334	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs112400242	chr9:22653383-22653384	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs376017778	chr9:22653393-22653394	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs199520159	chr9:22653396-22653397	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs192059472	chr9:22653409-22653410	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs553545028	chr9:22653455-22653456	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs181549417	chr9:22653473-22653474	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs186029976	chr9:22653536-22653537	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs562135925	chr9:22653555-22653556	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs575747616	chr9:22653563-22653564	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs530780219	chr9:22653594-22653595	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs546324568	chr9:22653598-22653599	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs546383439	chr9:22653630-22653631	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs533403641	chr9:22653692-22653693	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs200994110	chr9:22653763-22653764	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs78060882	chr9:22653768-22653769	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs543713474	chr9:22653802-22653803	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs558451457	chr9:22653816-22653817	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs10965412	chr9:22653899-22653900	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs532212494	chr9:22653912-22653913	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs551935173	chr9:22653918-22653919	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs565463538	chr9:22653922-22653923	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs13300526	chr9:22653945-22653946	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs562039861	chr9:22653999-22654000	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs145536300	chr9:22654031-22654032	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs547942182	chr9:22654047-22654048	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs568055899	chr9:22654056-22654057	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs536596766	chr9:22654198-22654199	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:149)

Disease	PMID	Source
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Cancer	22183965	CNVD
Glioblastoma multiforme	21569311	CNVD
Myelofibrosis	22110671	CNVD
Ewing''s sarcoma	22429812	CNVD
Neuroblastoma	21899760	CNVD
Glioblastoma multiforme	19435819	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Lung cancer	21911935	CNVD
Primary central nervous system lymphoma	21088137	CNVD
head and neck squamous cell carcinoma	21798897	CNVD
Cancer	21253487	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Glioblastoma multiforme	21922591	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Urothelial cell carcinoma	18451213	CNVD
Glioma	17123091	CNVD
Mental retardation	17124404	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Acute lymphoblastic leukemia	18768390	CNVD
Leukemia	19602459	CNVD
Acute monocytic leukemia	16498392	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Leukemia	18688285	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Acute myeloid leukemia	19651601	CNVD
Coronary Disease	20032323	CNVD
Squamous cell cancer	20885788	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21732550	CNVD
Gastric cancer	22539939	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Metastatic melanoma	18483359	CNVD
Non-small cell lung cancer	20864512	CNVD
Cervical cancer	21062161	CNVD
Acute myeloid leukemia	16864856	CNVD
Glioblastoma	17090523	CNVD
Lung cancer	16773561	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16774939	CNVD
Bladder cancer	19088036	CNVD
Colorectal cancer	16272173	CNVD
Melanoma	16977458	CNVD
Glioblastoma multiforme	17369134	CNVD
Chagasic megaesophagus	20163722	CNVD
Melanoma	19566914	CNVD
Squamous cell cancer	19047905	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Hodgkin''s lymphoma	18179710	CNVD
Glioma	20126413	CNVD
Melanoma	17363583	CNVD
Glioblastoma multiforme	19115005	CNVD
Glioblastoma multiforme	21138945	CNVD
Adenoid cystic carcinoma	18332873	CNVD
Cancer	20581869	CNVD
Oral cancer	22144094	CNVD
Barrett''s syndrome	19417022	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Acute myeloid leukemia	21251322	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21364760	CNVD
Acute myeloid leukemia	17237825	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
early-passage human iPS cells	21368824	CNVD
Breast cancer	21858162	CNVD

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:22650000-22653800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr9:22650800-22653200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:22651200-22657000	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr9:22652000-22656400	Weak transcription	Adipose Nuclei	Adipose
5	chr9:22652600-22652800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr9:22652800-22653000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr9:22653000-22653200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr9:22653200-22654600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr9:22653200-22655000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:22653800-22654000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr9:22654000-22654400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr9:22654200-22654800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr9:22654400-22655600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr9:22654600-22655000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr9:22654800-22657000	Weak transcription	Liver	Liver
16	chr9:22654800-22663600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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