Variant report

Variant	esv3491780
Chromosome Location	chr10:58863466-58863913
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 62 )

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs531516820	chr10:58863476-58863477	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs549794404	chr10:58863493-58863494	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs114354078	chr10:58863519-58863520	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs541751709	chr10:58863548-58863549	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs201950629	chr10:58863549-58863550	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs568395724	chr10:58863558-58863559	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs191711295	chr10:58863595-58863596	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs532590742	chr10:58863624-58863625	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs529596468	chr10:58863637-58863638	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs555516228	chr10:58863638-58863639	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs370835357	chr10:58863660-58863661	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs547819824	chr10:58863681-58863682	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs566030253	chr10:58863698-58863699	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs184263144	chr10:58863704-58863705	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs3861043	chr10:58863728-58863729	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs377203482	chr10:58863752-58863753	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs566143363	chr10:58863756-58863757	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs570189838	chr10:58863817-58863818	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs537632837	chr10:58863818-58863819	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs569365509	chr10:58863860-58863861	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs533843277	chr10:58863866-58863867	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:62)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Obesity	21956041	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16272173	CNVD
Metanephric adenoma	20802469	CNVD
Autism	20841430	CNVD
Mental retardation	17124404	CNVD
Epilepsy	20923578	CNVD
Prostate cancer	16573809	CNVD
Schizophrenia	19329560	CNVD
Heart failure	18772530	CNVD
Heart failure	18854381	CNVD
Hyperglycemia	19060297	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Glioblastoma multiforme	22286061	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Usher syndrome	20538994	CNVD
Glioblastoma multiforme	17002787	CNVD
small cell lung cancer	17426248	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Cancer	20164919	CNVD

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:58854000-58863600	Weak transcription	Right Atrium	heart
2	chr10:58861400-58863600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr10:58862200-58867400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:58863200-58865400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:58863200-58866200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr10:58863200-58867200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr10:58863200-58870000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:58863200-58879400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr10:58863400-58866400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr10:58863400-58866400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr10:58863400-58870200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr10:58863600-58865600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links