Variant report

Variant	esv3493622
Chromosome Location	chr5:107668571-107668959
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 81 )

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs193098803	chr5:107668589-107668590	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs17161246	chr5:107668623-107668624	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs370735117	chr5:107668636-107668637	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs201490678	chr5:107668641-107668642	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs200074161	chr5:107668642-107668643	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs68120825	chr5:107668643-107668644	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs529607489	chr5:107668694-107668695	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs185743077	chr5:107668700-107668701	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs549371807	chr5:107668740-107668741	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs188968054	chr5:107668771-107668772	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs529126361	chr5:107668789-107668790	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs145030445	chr5:107668849-107668850	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs57702888	chr5:107668869-107668870	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs200249105	chr5:107668870-107668871	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs35825090	chr5:107668896-107668897	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs534696910	chr5:107668906-107668907	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs551502431	chr5:107668955-107668956	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:81)

Disease	PMID	Source
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Medulloblastoma	21979893	CNVD
Phyllodes tumor	17334353	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Cancer	16751803	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Melanoma	18172304	CNVD
Glioma	20126413	CNVD
Breast cancer	17393978	CNVD
Cancer	21359685	CNVD
Non-small cell lung cancer	21829676	CNVD
adenomatous polyposis	22470819	CNVD
Cancer	22429812	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Liposarcoma	21253554	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21858162	CNVD
Leukemia	17361228	CNVD
Myelodysplastic syndrome	18508791	CNVD
5q-syndrome	17576883	CNVD
Gastric cancer	17908304	CNVD
Lung cancer	16740712	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Barrett''s syndrome	19417022	CNVD
Lung cancer	18438408	CNVD
Retinoblastoma	22278416	CNVD
Bipolar disorder	18458673	CNVD
Thyroid cancer	19087340	CNVD
Breast cancer	21785460	CNVD
Squamous cell cancer	20885788	CNVD
Hepatocellular carcinoma	16750200	CNVD
Neurodevelopmental disorder	22521361	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	17133270	CNVD
Acute myeloid leukemia	20729466	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Acute myeloid leukemia	21251322	CNVD
lymphocytic leukemia	21291569	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	16573809	CNVD
Cancer	20164920	CNVD
Myelodysplastic syndrome	21251322	CNVD
abnormal development	18461090	CNVD
Colorectal cancer	16774939	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Multiple myeloma	17550852	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Ovarian cancer	21720365	CNVD
Neurocytoma	17123091	CNVD
Salivary gland tumor	18059337	CNVD
Breast cancer	21509527	CNVD
Breast cancer	16608533	CNVD
Myelofibrosis	22110671	CNVD
Lung cancer	16773561	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107615000-107705600	Weak transcription	Left Ventricle	heart
2	chr5:107620600-107678600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr5:107634200-107679400	Weak transcription	Fetal Intestine Large	intestine
4	chr5:107639800-107697200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:107644600-107669600	Weak transcription	Primary B cells from cord blood	blood
6	chr5:107648000-107704800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr5:107653800-107670200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr5:107654600-107709400	Weak transcription	Pancreas	Pancrea
9	chr5:107656000-107686400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr5:107657400-107678200	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr5:107658600-107709200	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr5:107659400-107700000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr5:107660800-107671400	Weak transcription	Fetal Stomach	stomach
14	chr5:107660800-107679200	Weak transcription	Fetal Intestine Small	intestine
15	chr5:107661600-107687600	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr5:107661800-107696400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr5:107662200-107681400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr5:107662800-107682800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr5:107663200-107678200	Weak transcription	Primary B cells from peripheral blood	blood
20	chr5:107663400-107678000	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr5:107663800-107709400	Weak transcription	Primary T cells from cord blood	blood
22	chr5:107664200-107678200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr5:107666600-107672600	Weak transcription	Lung	lung
24	chr5:107667600-107709200	Weak transcription	Duodenum Mucosa	Duodenum
25	chr5:107668600-107678200	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr5:107668600-107679400	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr5:107668600-107706800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr5:107668800-107699600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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