Variant report

Variant	esv3493688
Chromosome Location	chr7:152574705-152651559
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:32)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:32 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:152588549..152590178-chr7:152590291..152592106,2	K562	blood:
2	chr7:152588549..152590178-chr7:152590291..152592106,2	K562	blood:
3	chr7:152595309..152597143-chr7:153102901..153104884,2	K562	blood:
4	chr7:152592469..152595715-chr7:152602520..152605379,3	K562	blood:
5	chr7:152595615..152597304-chr7:152598757..152600318,2	K562	blood:
6	chr7:152589505..152592233-chr7:153104803..153106680,2	K562	blood:
7	chr7:152595615..152597304-chr7:152598757..152600318,2	K562	blood:
8	chr7:152615302..152618070-chr7:152618981..152621155,2	K562	blood:
9	chr7:152590930..152593024-chr7:152603046..152604985,2	MCF-7	breast:
10	chr7:152590930..152593024-chr7:152603046..152604985,2	MCF-7	breast:
11	chr7:152588507..152591156-chr7:152595233..152597420,2	K562	blood:
12	chr7:152556489..152557016-chr7:152591189..152592154,2	K562	blood:
13	chr7:152600593..152604431-chr7:153104940..153107829,3	K562	blood:
14	chr7:152615302..152618070-chr7:152618981..152621155,2	K562	blood:
15	chr7:152579764..152582618-chr7:152582965..152586038,3	K562	blood:
16	chr7:152633416..152636337-chr7:152638112..152639787,2	MCF-7	breast:
17	chr7:152615135..152617990-chr7:153104764..153107812,3	K562	blood:
18	chr7:152588968..152591150-chr7:152591606..152593343,2	MCF-7	breast:
19	chr7:152630894..152632696-chr7:153103935..153106331,2	K562	blood:
20	chr7:152588968..152591150-chr7:152591606..152593343,2	MCF-7	breast:
21	chr7:152588507..152591156-chr7:152595233..152597420,2	K562	blood:
22	chr7:152591144..152592074-chr7:152656414..152657185,2	MCF-7	breast:
23	chr7:152591184..152592070-chr7:153078454..153079236,2	MCF-7	breast:
24	chr7:152633416..152636337-chr7:152638112..152639787,2	MCF-7	breast:
25	chr7:152592469..152595715-chr7:152602520..152605379,3	K562	blood:
26	chr7:152616673..152619076-chr7:152800039..152802738,2	K562	blood:
27	chr7:26241300..26241961-chr7:152626602..152627526,2	Hela-S3	cervix:
28	chr7:152592588..152594175-chr7:153102302..153103832,2	K562	blood:
29	chr7:152596836..152599068-chr7:152599641..152602320,2	K562	blood:
30	chr7:152596836..152599068-chr7:152599641..152602320,2	K562	blood:
31	chr7:152579764..152582618-chr7:152582965..152586038,3	K562	blood:
32	chr7:152591605..152592124-chr7:153532194..153532836,2	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ACTR3B-4	chr7:152583184-152583297	NONHSAT124285
2	lnc-ACTR3B-4	chr7:152584608-152584832	NONHSAT124285

No data

Variant related genes	Relation type
ENSG00000122565	chromatin interactions

Extended variants
information (count: 3022 )
Associated
traits (count: 90 )

Variant overlapped rSNPs/rCNVs (count:3022 , 50 per page) page: 1 2 3 4 5 6 7 ... 61

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs200337285	chr7:152574763-152574764	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs528497096	chr7:152574802-152574803	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs376481469	chr7:152574826-152574827	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs2948961	chr7:152574929-152574930	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs531228307	chr7:152574948-152574949	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs189879263	chr7:152574966-152574967	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs201665710	chr7:152575002-152575003	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs116543623	chr7:152575051-152575052	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs2966497	chr7:152575075-152575076	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs370143077	chr7:152575192-152575193	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs561316585	chr7:152575291-152575292	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs531714169	chr7:152575295-152575296	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs199959459	chr7:152575358-152575359	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs570310174	chr7:152575372-152575373	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs74539277	chr7:152575373-152575374	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs182423380	chr7:152575420-152575421	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs552762097	chr7:152575425-152575426	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs535389382	chr7:152575439-152575440	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs568186494	chr7:152575451-152575452	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs535629551	chr7:152575452-152575453	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs557232727	chr7:152575491-152575492	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs372412112	chr7:152575528-152575529	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs575606153	chr7:152575578-152575579	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs2948960	chr7:152575590-152575591	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs2966496	chr7:152575594-152575595	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs573128640	chr7:152575609-152575610	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs547662546	chr7:152575620-152575621	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs75143772	chr7:152575639-152575640	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs561833797	chr7:152575659-152575660	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs200969999	chr7:152575679-152575680	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs529390321	chr7:152575683-152575684	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs544400975	chr7:152575684-152575685	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs186651210	chr7:152575702-152575703	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs191293696	chr7:152575808-152575809	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs373509891	chr7:152575809-152575810	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs536510998	chr7:152575810-152575811	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs560859369	chr7:152575811-152575812	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs2966495	chr7:152575847-152575848	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs546652536	chr7:152575892-152575893	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs371064301	chr7:152575927-152575928	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs143084623	chr7:152575945-152575946	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs145090554	chr7:152575964-152575965	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs550697436	chr7:152576001-152576002	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs568926239	chr7:152576027-152576028	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs183195479	chr7:152576036-152576037	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs570005870	chr7:152576062-152576063	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs34838120	chr7:152576068-152576069	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs2966494	chr7:152576128-152576129	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs373113599	chr7:152576157-152576158	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs187495425	chr7:152576166-152576167	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:90)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Wilms tumour	21544195	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Multiple myeloma	17550852	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neurodevelopmental disorder	22521361	CNVD
abortions and stillbirths	19751515	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Burkitt''s lymphoma	19759907	CNVD
lymphocytic leukemia	21291569	CNVD
Acute myeloid leukemia	21251322	CNVD
Prostate cancer	16573809	CNVD
Medulloblastoma	16783165	CNVD
abnormal development	18461090	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Papillary thyroid carcinoma	21436994	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Hodgkin''s lymphoma	18179710	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Breast cancer	17603634	CNVD
Urothelial carcinoma	18382360	CNVD
Myelodysplastic syndrome	17634407	CNVD
Multiple myeloma	16461302	CNVD
Neuroblastoma	18923191	CNVD
Schizophrenia	17646849	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	16864856	CNVD
Autism	20808228	CNVD
Ovarian cancer	21720365	CNVD
Lobular carcinoma	20920651	CNVD
Long-qt syndrome	20920651	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Liver carcinoma	19366792	CNVD
Long-qt syndrome	17576883	CNVD
Bradycardia syndrome	17576883	CNVD
Sudden cardiac death	19188705	CNVD
renal disease	17924346	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Autism	22102821	CNVD
Myelofibrosis	22110671	CNVD
Nasopharyngeal cancer	20548289	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Bipolar disorder	19114987	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Amyotrophic lateral sclerosis	20685689	CNVD
Autism	19546859	CNVD
Schizophrenia	19546859	CNVD
Tourette syndrome	19546859	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:466 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:152567200-152584200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr7:152567600-152574800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:152573800-152581200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:152578000-152591200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:152580600-152581600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr7:152580600-152581800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr7:152580800-152581000	Enhancers	Stomach Smooth Muscle	stomach
8	chr7:152580800-152581600	Enhancers	H9 Cell Line	embryonic stem cell
9	chr7:152580800-152581800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr7:152580800-152582400	Enhancers	H1 Cell Line	embryonic stem cell
11	chr7:152581200-152581600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr7:152581200-152581800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr7:152581800-152588400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr7:152581800-152590000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr7:152583400-152591200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr7:152584200-152585200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
17	chr7:152585000-152585200	ZNF genes & repeats	Right Atrium	heart
18	chr7:152585000-152588400	Weak transcription	Gastric	stomach
19	chr7:152585200-152586000	Weak transcription	Right Atrium	heart
20	chr7:152586000-152586400	ZNF genes & repeats	Right Atrium	heart
21	chr7:152586400-152611400	Weak transcription	Right Atrium	heart
22	chr7:152588400-152588800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr7:152588800-152589000	Weak transcription	Gastric	stomach
24	chr7:152588800-152591000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr7:152591000-152592600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr7:152591200-152591400	Flanking Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr7:152591200-152592200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr7:152591400-152591600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr7:152591400-152591600	Active TSS	Liver	Liver
30	chr7:152591400-152591800	Enhancers	Primary T helper cells fromperipheralblood	blood
31	chr7:152591400-152591800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr7:152591400-152591800	Enhancers	Adipose Nuclei	Adipose
33	chr7:152591400-152591800	Active TSS	Brain Hippocampus Middle	brain
34	chr7:152591400-152591800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
35	chr7:152591400-152591800	Bivalent Enhancer	Right Ventricle	heart
36	chr7:152591400-152591800	Enhancers	HepG2	liver
37	chr7:152591400-152592000	Active TSS	iPS-15b Cell Line	embryonic stem cell
38	chr7:152591400-152592000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
39	chr7:152591400-152592000	Enhancers	Brain Inferior Temporal Lobe	brain
40	chr7:152591400-152592000	Bivalent Enhancer	Fetal Muscle Leg	muscle
41	chr7:152591400-152592000	Enhancers	Pancreas	Pancrea
42	chr7:152591400-152592200	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr7:152591400-152592200	Enhancers	Fetal Brain Male	brain
44	chr7:152591400-152592200	Enhancers	Spleen	Spleen
45	chr7:152591600-152591800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr7:152591600-152591800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr7:152591600-152591800	Enhancers	Liver	Liver
48	chr7:152591600-152591800	Active TSS	Brain Anterior Caudate	brain
49	chr7:152591600-152591800	Active TSS	Fetal Brain Female	brain
50	chr7:152591600-152591800	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links