Variant report

Variant	esv3497007
Chromosome Location	chr11:104316038-104320777
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:104318241..104320528-chr11:104331933..104333593,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CASP12-1	chr11:104316596-104316740	ENSG00000256422

Extended variants
information (count: 204 )
Associated
traits (count: 101 )

Variant overlapped rSNPs/rCNVs (count:204 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs181046532	chr11:104316050-104316051	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs185080516	chr11:104316090-104316091	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs369826836	chr11:104316141-104316142	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs552837982	chr11:104316189-104316190	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs76341475	chr11:104316207-104316208	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs140924889	chr11:104316221-104316222	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs369981550	chr11:104316234-104316235	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs191205895	chr11:104316288-104316289	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs371769823	chr11:104316293-104316294	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs375051141	chr11:104316331-104316332	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs533818710	chr11:104316336-104316337	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs553667378	chr11:104316339-104316340	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs576763529	chr11:104316341-104316342	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs545574149	chr11:104316342-104316343	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs562392690	chr11:104316356-104316357	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs575726635	chr11:104316377-104316378	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs552772044	chr11:104316380-104316381	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs573028327	chr11:104316391-104316392	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs561476893	chr11:104316465-104316466	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs13377505	chr11:104316488-104316489	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs182531061	chr11:104316497-104316498	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs142383032	chr11:104316518-104316519	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs532883195	chr11:104316519-104316520	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs34623545	chr11:104316522-104316523	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs569483652	chr11:104316561-104316562	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs564856531	chr11:104316576-104316577	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs187609278	chr11:104316577-104316578	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs549494953	chr11:104316610-104316611	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
29	rs555722346	chr11:104316622-104316623	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
30	rs575565284	chr11:104316643-104316644	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
31	rs543849204	chr11:104316654-104316655	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
32	rs571637129	chr11:104316671-104316672	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
33	rs114353927	chr11:104316702-104316703	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
34	rs563744993	chr11:104316790-104316791	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs12807863	chr11:104316839-104316840	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs553779974	chr11:104316844-104316845	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs377573680	chr11:104316855-104316856	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs546304021	chr11:104316880-104316881	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs559575574	chr11:104316912-104316913	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs570413471	chr11:104316934-104316935	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs539391327	chr11:104316942-104316943	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs555897332	chr11:104316943-104316944	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs191890231	chr11:104317029-104317030	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs35931429	chr11:104317058-104317059	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs76292108	chr11:104317078-104317079	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs183737490	chr11:104317103-104317104	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs572078784	chr11:104317105-104317106	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs80003098	chr11:104317249-104317250	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs369423510	chr11:104317272-104317273	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs187421501	chr11:104317292-104317293	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:101)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Acute myeloid leukemia	20729466	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Cervical cancer	21062161	CNVD
Esophageal squamous carcinoma	18350619	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	22429812	CNVD
Breast cancer	16608533	CNVD
T-cell lymphomas	19863542	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Basal cell lymphoma	17053054	CNVD
Hepatocellular carcinoma	16785998	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21785460	CNVD
Breast cancer	21958427	CNVD
Lung cancer	18438408	CNVD
Ewing''s sarcoma	17952124	CNVD
Renal cell carcinoma	18194544	CNVD
Breast cancer	17133270	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	17603634	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Basal cell lymphoma	16790693	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Breast cancer	21364760	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Mental retardation	19966786	CNVD
Non-small cell lung cancer	21829676	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Intracranial aneurysm	16715129	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Urothelial carcinoma	21177765	CNVD
Myelofibrosis	22110671	CNVD
Ovarian cancer	21720365	CNVD
Chronic lymphocytic leukemia	17805327	CNVD
Glioblastoma multiforme	22286061	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Neuroblastoma	17327916	CNVD
Melanoma	17363583	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Mantle cell lymphoma	19029149	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Malignant melanoma	17260012	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Prostate cancer	16573809	CNVD
Obesity	19966786	CNVD
Tetralogy of Fallot	22912587	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Cancer	20164919	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:104314600-104323200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr11:104315000-104316800	Enhancers	Stomach Mucosa	stomach
3	chr11:104316000-104320200	Weak transcription	Fetal Heart	heart
4	chr11:104316800-104321400	Weak transcription	Stomach Mucosa	stomach
5	chr11:104319400-104320200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:104320200-104320600	Enhancers	Fetal Heart	heart
7	chr11:104320200-104322000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr11:104320600-104320800	Weak transcription	Fetal Heart	heart

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