Variant report

Variant	esv3498035
Chromosome Location	chr19:56517190-56520588
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 67 )

Variant overlapped rSNPs/rCNVs (count:54 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs186074458	chr19:56519019-56519020	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs190597125	chr19:56519033-56519034	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs536393354	chr19:56519058-56519059	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs72629146	chr19:56519059-56519060	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs492221	chr19:56519060-56519061	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs534833732	chr19:56519098-56519099	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs182891170	chr19:56519099-56519100	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs201157737	chr19:56519116-56519117	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs137984853	chr19:56519117-56519118	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs58273585	chr19:56519118-56519119	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs540374903	chr19:56519124-56519125	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs543702147	chr19:56519161-56519162	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs563316932	chr19:56519204-56519205	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs146881207	chr19:56519209-56519210	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs140570438	chr19:56519235-56519236	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs199933768	chr19:56519236-56519237	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs374597846	chr19:56519254-56519255	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs77181357	chr19:56519255-56519256	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs67935261	chr19:56519256-56519257	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs62123584	chr19:56519258-56519259	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs199699089	chr19:56519259-56519260	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs11084420	chr19:56519260-56519261	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs62123585	chr19:56519261-56519262	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs139100869	chr19:56519262-56519263	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs200699149	chr19:56519263-56519264	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs201391113	chr19:56519264-56519265	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs143988731	chr19:56519266-56519267	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs7253124	chr19:56519268-56519269	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs377205469	chr19:56519270-56519271	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs148409385	chr19:56519271-56519272	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs7253134	chr19:56519274-56519275	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs55667439	chr19:56519276-56519277	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs200543430	chr19:56519282-56519283	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs111698228	chr19:56519284-56519285	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs551559468	chr19:56519292-56519293	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs74181748	chr19:56519293-56519294	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs534876113	chr19:56519308-56519309	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs56024736	chr19:56519309-56519310	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs187851893	chr19:56519323-56519324	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs550859402	chr19:56519324-56519325	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs567349381	chr19:56519327-56519328	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs386811149	chr19:56519335-56519336	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs536633654	chr19:56519340-56519341	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs546644675	chr19:56519347-56519348	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs140638787	chr19:56519355-56519356	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs538711874	chr19:56519357-56519358	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs150034375	chr19:56519360-56519361	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs145373034	chr19:56519363-56519364	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs71368879	chr19:56519376-56519377	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs371503658	chr19:56519385-56519386	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:67)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Ductal carcinoma	22052326	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	16864856	CNVD
Bladder cancer	21909424	CNVD
Medulloblastoma	16783165	CNVD
Acute myeloid leukemia	20729466	CNVD
Ovarian cancer	22174824	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Wilms tumour	21544195	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Congenital anomalies of the kidney and urinary tract	18852474	CNVD
Glioblastoma multiforme	17002787	CNVD
Cervical cancer	21062161	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Prostate cancer	16573809	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lung cancer	18438408	CNVD
Colorectal cancer	16272173	CNVD
Ovarian cancer	21781307	CNVD
Neuroblastoma	20406844	CNVD
Breast cancer	21785460	CNVD
Myelofibrosis	22110671	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Alzheimer''s disease	22166940	CNVD
Heart disease	21282601	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Glioblastoma multiforme	21922591	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Breast cancer	20409316	CNVD
Breast cancer	22522925	CNVD
early-passage human iPS cells	21368824	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:56519000-56519400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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