Variant report

Variant	esv3499563
Chromosome Location	chr12:526891-533389
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 389 )
Associated
traits (count: 86 )

Variant overlapped rSNPs/rCNVs (count:389 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs569373254	chr12:526898-526899	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs563741003	chr12:526945-526946	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs545850200	chr12:526979-526980	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs386759341	chr12:527007-527008	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs12578980	chr12:527041-527042	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs190527809	chr12:527047-527048	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs117355325	chr12:527118-527119	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs555776505	chr12:527126-527127	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs567909883	chr12:527127-527128	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs549527168	chr12:527139-527140	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs143615510	chr12:527216-527217	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs148067926	chr12:527221-527222	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs577334320	chr12:527227-527228	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs561389191	chr12:527299-527300	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs553757787	chr12:527302-527303	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs571942267	chr12:527306-527307	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs542946759	chr12:527308-527309	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs12303613	chr12:527320-527321	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs576355022	chr12:527321-527322	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs543661853	chr12:527348-527349	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs182739878	chr12:527389-527390	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs533495908	chr12:527430-527431	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs551903098	chr12:527473-527474	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs200437860	chr12:527490-527491	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs560576377	chr12:527515-527516	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs185553224	chr12:527560-527561	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs549313028	chr12:527580-527581	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs372619680	chr12:527621-527622	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs200889895	chr12:527624-527625	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs549996829	chr12:527637-527638	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs199851073	chr12:527638-527639	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs138940892	chr12:527682-527683	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs149444229	chr12:527695-527696	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs368635765	chr12:527713-527714	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs553575731	chr12:527723-527724	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs372327136	chr12:527726-527727	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs201579428	chr12:527730-527731	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs112747420	chr12:527732-527733	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs199553690	chr12:527744-527745	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs377121573	chr12:527753-527754	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs138444922	chr12:527769-527770	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs138669883	chr12:527789-527790	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs144010623	chr12:527790-527791	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs147266504	chr12:527792-527793	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs371744226	chr12:527819-527820	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs113437345	chr12:527847-527848	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs370383054	chr12:527848-527849	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs373398695	chr12:527870-527871	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs565124815	chr12:527880-527881	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs141643304	chr12:527884-527885	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:86)

Disease	PMID	Source
Cancer	20164920	CNVD
Myelofibrosis	22110671	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD
Glaucoma	21310917	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Malignant peripheral nerve sheath tumor	19844265	CNVD
Squamous cell cancer	19607727	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Mental retardation	17847001	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
abnormal development	18461090	CNVD
Ovarian cancer	20844748	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Medulloblastoma	16968546	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Breast cancer	22032731	CNVD
Cancer	21183584	CNVD
Myxofibrosarcoma	16751306	CNVD
Non-small cell lung cancer	21829676	CNVD
Ovarian neoplasms	16753589	CNVD
Prostate cancer	21965145	CNVD
Acute myeloid leukemia	16864856	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Disorders of sex development	21048976	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Prostate cancer	19156837	CNVD
Emphysema	19352772	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Malignant germ cell tumour	17285132	CNVD
Melanoma	18172304	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Wilms tumour	21544195	CNVD
Squamous cell cancer	21044232	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	19960244	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Breast cancer	21264507	CNVD
Cancer	16751803	CNVD
Testicular cancer	18059402	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Seminomas	18059402	CNVD
Esophageal cancer	21851588	CNVD
Lung cancer	20668451	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Testicular germ cell tumor	18059402	CNVD
Malaria	21533027	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
small cell lung cancer	20016488	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Breast cancer	21364760	CNVD
Developmental delay	21147756	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21509527	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21785460	CNVD
Autism	22495309	CNVD
Ovarian cancer	21720365	CNVD
Myelodysplastic syndrome	21251322	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Melanoma	20877625	CNVD
Cancer	20164919	CNVD
Breast cancer	22522925	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Pleomorphic liposarcoma	18784837	CNVD
small cell lung cancer	17426248	CNVD

Chromatin state (count:339 , 50 per page) page: 1 2 3 4 5 6 7

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:511600-544600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr12:512000-545800	Weak transcription	HMEC	breast
3	chr12:512000-549600	Weak transcription	Colon Smooth Muscle	Colon
4	chr12:512200-540200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr12:512200-557800	Weak transcription	Fetal Heart	heart
6	chr12:512600-528600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr12:512600-528800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr12:512600-552200	Weak transcription	Fetal Brain Male	brain
9	chr12:513600-529000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr12:513600-529800	Strong transcription	HUES48 Cell Line	embryonic stem cell
11	chr12:514200-528600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr12:514200-528800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
13	chr12:514400-528800	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr12:514800-528600	Strong transcription	H1 Cell Line	embryonic stem cell
15	chr12:518400-528800	Strong transcription	Dnd41	blood
16	chr12:518600-528400	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr12:518800-529800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr12:519400-528600	Strong transcription	Fetal Stomach	stomach
19	chr12:519400-529800	Strong transcription	HUES6 Cell Line	embryonic stem cell
20	chr12:519600-528600	Strong transcription	Thymus	Thymus
21	chr12:519800-528600	Strong transcription	H9 Cell Line	embryonic stem cell
22	chr12:519800-528600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr12:519800-528600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr12:519800-528800	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr12:519800-528800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr12:520000-527800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr12:520400-528600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr12:520800-528600	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr12:520800-528600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr12:520800-528600	Strong transcription	A549	lung
31	chr12:521800-527800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr12:522000-527400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr12:522000-527600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr12:522000-527600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr12:522000-527600	Weak transcription	Brain Substantia Nigra	brain
36	chr12:522000-527600	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr12:522000-527600	Weak transcription	Right Ventricle	heart
38	chr12:522000-527800	Weak transcription	Aorta	Aorta
39	chr12:522000-527800	Weak transcription	Spleen	Spleen
40	chr12:522000-534400	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr12:522000-541800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr12:522000-541800	Weak transcription	Pancreas	Pancrea
43	chr12:522000-542000	Weak transcription	HSMMtube	muscle
44	chr12:522000-551800	Weak transcription	NHEK	skin
45	chr12:522200-527800	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr12:522800-528600	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr12:523200-528600	Strong transcription	Fetal Thymus	thymus
48	chr12:523600-528600	Strong transcription	Fetal Lung	lung
49	chr12:523800-528600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr12:524200-527400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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