Variant report

Variant	esv3499882
Chromosome Location	chr10:39095094-39108008
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2307 )
Associated
traits (count: 41 )

Variant overlapped rSNPs/rCNVs (count:2307 , 50 per page) page: 1 2 3 4 5 6 7 ... 47

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs565838881	chr10:39095106-39095107	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs77771604	chr10:39095127-39095128	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs558291752	chr10:39095131-39095132	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs370854021	chr10:39095151-39095152	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs113212223	chr10:39095158-39095159	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs548178723	chr10:39095159-39095160	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs568094858	chr10:39095165-39095166	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs139298609	chr10:39095170-39095171	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs557112234	chr10:39095176-39095177	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs576976732	chr10:39095180-39095181	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs374736493	chr10:39095181-39095182	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs112792833	chr10:39095185-39095186	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs559063657	chr10:39095187-39095188	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs112444697	chr10:39095207-39095208	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs200170087	chr10:39095210-39095211	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs572552757	chr10:39095220-39095221	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs540432463	chr10:39095230-39095231	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs368978113	chr10:39095232-39095233	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs561231628	chr10:39095240-39095241	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs112682506	chr10:39095248-39095249	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs571673522	chr10:39095249-39095250	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs540737903	chr10:39095256-39095257	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs7075522	chr10:39095274-39095275	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
24	rs111815739	chr10:39095277-39095278	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs370291045	chr10:39095281-39095282	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs141092308	chr10:39095285-39095286	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs73243204	chr10:39095315-39095316	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs559539026	chr10:39095329-39095330	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs528254595	chr10:39095341-39095342	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs117103492	chr10:39095355-39095356	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs568331145	chr10:39095357-39095358	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs111248193	chr10:39095372-39095373	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs186455691	chr10:39095376-39095377	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs550555955	chr10:39095378-39095379	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs370054941	chr10:39095395-39095396	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs7075691	chr10:39095400-39095401	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
37	rs189698967	chr10:39095418-39095419	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs202165527	chr10:39095436-39095437	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs76328793	chr10:39095442-39095443	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs532330614	chr10:39095455-39095456	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs572634767	chr10:39095460-39095461	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs80240464	chr10:39095465-39095466	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs554866521	chr10:39095476-39095477	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs574758636	chr10:39095480-39095481	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs79560630	chr10:39095483-39095484	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs4881578	chr10:39095486-39095487	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs4881579	chr10:39095489-39095490	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs75933013	chr10:39095491-39095492	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs546312236	chr10:39095494-39095495	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs559567653	chr10:39095496-39095497	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:41)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	20459617	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Central neurocytomas	17123091	CNVD
Neurocytoma	17123091	CNVD
small cell lung cancer	20016488	CNVD
Schizophrenia	20967226	CNVD
Myelofibrosis	22110671	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	21509527	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:153 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:39076400-39155000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
2	chr10:39076600-39095200	ZNF genes & repeats	Colon Smooth Muscle	Colon
3	chr10:39076600-39097200	ZNF genes & repeats	Fetal Heart	heart
4	chr10:39076600-39099000	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
5	chr10:39076600-39100800	ZNF genes & repeats	Brain Substantia Nigra	brain
6	chr10:39076600-39101000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:39076600-39101400	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
8	chr10:39076600-39101800	ZNF genes & repeats	Colonic Mucosa	Colon
9	chr10:39076600-39102200	ZNF genes & repeats	Brain Anterior Caudate	brain
10	chr10:39076600-39102400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
11	chr10:39076600-39116600	ZNF genes & repeats	Fetal Kidney	kidney
12	chr10:39076600-39121600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
13	chr10:39076600-39131800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
14	chr10:39076600-39154600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
15	chr10:39076600-39154800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
16	chr10:39076600-39154800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
17	chr10:39076600-39154800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
18	chr10:39076600-39154800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
19	chr10:39076600-39154800	ZNF genes & repeats	Adipose Nuclei	Adipose
20	chr10:39076600-39155000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
21	chr10:39076600-39155000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr10:39076600-39155000	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr10:39076600-39155000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
24	chr10:39076600-39155000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
25	chr10:39076600-39155000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
26	chr10:39076600-39155000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
27	chr10:39076600-39155000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
28	chr10:39076600-39155000	ZNF genes & repeats	Primary T cells from cord blood	blood
29	chr10:39076600-39155000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
30	chr10:39076600-39155000	ZNF genes & repeats	Liver	Liver
31	chr10:39076600-39155000	ZNF genes & repeats	Brain Hippocampus Middle	brain
32	chr10:39076600-39155000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
33	chr10:39076600-39155000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
34	chr10:39076600-39155000	ZNF genes & repeats	Fetal Brain Male	brain
35	chr10:39076600-39155000	ZNF genes & repeats	Fetal Lung	lung
36	chr10:39076600-39155000	ZNF genes & repeats	Dnd41	blood
37	chr10:39076600-39155000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
38	chr10:39076800-39095200	ZNF genes & repeats	Brain Cingulate Gyrus	brain
39	chr10:39076800-39098800	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
40	chr10:39076800-39111400	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
41	chr10:39076800-39152800	ZNF genes & repeats	Primary B cells from cord blood	blood
42	chr10:39076800-39154800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
43	chr10:39077200-39155000	ZNF genes & repeats	Gastric	stomach
44	chr10:39082000-39097600	ZNF genes & repeats	HepG2	liver
45	chr10:39084400-39099600	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr10:39090200-39100000	ZNF genes & repeats	K562	blood
47	chr10:39090200-39101800	ZNF genes & repeats	Brain Angular Gyrus	brain
48	chr10:39092200-39099200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr10:39092400-39101800	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
50	chr10:39092600-39099000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood

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