Variant report

Variant	esv3502424
Chromosome Location	chr10:110915776-110920303
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:110909632..110912318-chr10:110918760..110920466,2	MCF-7	breast:

Extended variants
information (count: 80 )
Associated
traits (count: 69 )

Variant overlapped rSNPs/rCNVs (count:80 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs536738584	chr10:110915779-110915780	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs556389933	chr10:110915790-110915791	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs2147283	chr10:110915808-110915809	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs535615612	chr10:110915809-110915810	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs576216484	chr10:110915816-110915817	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs183066845	chr10:110915820-110915821	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs376961794	chr10:110915852-110915853	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs71486069	chr10:110915870-110915871	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs187124102	chr10:110915877-110915878	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs398046238	chr10:110915878-110915879	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs2147284	chr10:110915892-110915893	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
12	rs558326321	chr10:110915930-110915931	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs557848595	chr10:110915936-110915937	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs578076642	chr10:110915941-110915942	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs115622090	chr10:110915970-110915971	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs563725338	chr10:110915971-110915972	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs2147285	chr10:110916028-110916029	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
18	rs191936613	chr10:110916031-110916032	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs559713186	chr10:110916052-110916053	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs182186790	chr10:110916062-110916063	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs372849172	chr10:110916102-110916103	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs551397203	chr10:110916161-110916162	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs150896950	chr10:110916162-110916163	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs530481005	chr10:110916215-110916216	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs550272545	chr10:110916252-110916253	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs187993722	chr10:110916271-110916272	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs535676563	chr10:110916303-110916304	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs113861988	chr10:110916327-110916328	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs11194430	chr10:110916329-110916330	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs61883172	chr10:110916384-110916385	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs185562344	chr10:110916389-110916390	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs577960538	chr10:110916422-110916423	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs537400711	chr10:110916485-110916486	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs557504263	chr10:110916530-110916531	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs574160810	chr10:110916554-110916555	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs199564969	chr10:110916555-110916556	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs542878329	chr10:110916561-110916562	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs111526185	chr10:110916562-110916563	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs79899666	chr10:110916565-110916566	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs370681781	chr10:110916602-110916603	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs111772453	chr10:110916656-110916657	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs550617174	chr10:110916661-110916662	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs139470907	chr10:110916663-110916664	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs74781690	chr10:110916691-110916692	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs530440694	chr10:110916696-110916697	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs550135166	chr10:110916831-110916832	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs111598318	chr10:110916866-110916867	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs146702455	chr10:110916871-110916872	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs549203742	chr10:110916923-110916924	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs551747310	chr10:110916944-110916945	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:69)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Paraganglioma	17535989	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	16573809	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	16608533	CNVD
small cell lung cancer	20016488	CNVD
Glioblastoma multiforme	17002787	CNVD
Breast cancer	17393978	CNVD
Ovarian cancer	21720365	CNVD
renal hypoplasia	20603712	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Myxofibrosarcoma	16751306	CNVD
Cornelia de Lange syndrome	24599119	CNVD
T-cell lymphomas	19863542	CNVD
Breast cancer	16397240	CNVD
Urothelial carcinoma	21177765	CNVD
Multiple myeloma	16616336	CNVD
Chronic lymphocytic leukemia	18645599	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	21509527	CNVD
Breast cancer	21364760	CNVD
Barrett''s syndrome	19417022	CNVD
Sezary syndrome	18413736	CNVD

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:110915600-110916000	Enhancers	Placenta Amnion	Placenta Amnion
2	chr10:110916000-110916400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr10:110916400-110917400	Enhancers	Placenta Amnion	Placenta Amnion
4	chr10:110916600-110917000	Enhancers	Fetal Kidney	kidney
5	chr10:110916600-110917200	Enhancers	Placenta	Placenta
6	chr10:110919400-110919600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr10:110920200-110920400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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