Variant report

Variant	esv3503110
Chromosome Location	chr10:19389446-19392094
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 105 )
Associated
traits (count: 40 )

Variant overlapped rSNPs/rCNVs (count:105 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs202079369	chr10:19389449-19389450	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs565575098	chr10:19389467-19389468	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs540209807	chr10:19389482-19389483	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs539327643	chr10:19389487-19389488	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs78930497	chr10:19389521-19389522	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs77424433	chr10:19389522-19389523	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs182146296	chr10:19389527-19389528	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs144656060	chr10:19389619-19389620	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs10826946	chr10:19389620-19389621	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs541997952	chr10:19389650-19389651	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs184762140	chr10:19389662-19389663	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs572498370	chr10:19389685-19389686	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs116294356	chr10:19389739-19389740	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs59380868	chr10:19389780-19389781	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs576814069	chr10:19389782-19389783	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs543994401	chr10:19389803-19389804	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs116034768	chr10:19389823-19389824	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs189243132	chr10:19389836-19389837	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs573313396	chr10:19389846-19389847	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs547205075	chr10:19389865-19389866	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs559422176	chr10:19389928-19389929	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs532733014	chr10:19389944-19389945	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs7085520	chr10:19389952-19389953	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs569567491	chr10:19389980-19389981	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs145418447	chr10:19389994-19389995	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs113772793	chr10:19390004-19390005	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs115984282	chr10:19390020-19390021	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs11008480	chr10:19390042-19390043	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs7069170	chr10:19390046-19390047	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs572586167	chr10:19390069-19390070	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs202161061	chr10:19390085-19390086	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs371559989	chr10:19390108-19390109	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs185824085	chr10:19390149-19390150	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs58485183	chr10:19390178-19390179	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs373399154	chr10:19390179-19390180	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs552341364	chr10:19390182-19390183	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs10692054	chr10:19390188-19390189	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs34397417	chr10:19390189-19390190	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs397780078	chr10:19390190-19390191	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs376842720	chr10:19390273-19390274	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs576802400	chr10:19390316-19390317	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs10740842	chr10:19390332-19390333	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs11008482	chr10:19390344-19390345	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs547886248	chr10:19390356-19390357	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs190296589	chr10:19390385-19390386	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs112499339	chr10:19390393-19390394	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs574124380	chr10:19390499-19390500	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs369659059	chr10:19390514-19390515	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs56094583	chr10:19390536-19390537	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs111218099	chr10:19390537-19390538	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:40)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Intracranial aneurysm	16715129	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Multiple myeloma	16616336	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Epilepsy	22083797	CNVD
Olfactory neuroblastoma	18408657	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21364760	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19377400-19391800	Weak transcription	Fetal Intestine Small	intestine
2	chr10:19386000-19392600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr10:19386600-19391400	Weak transcription	Fetal Intestine Large	intestine
4	chr10:19391400-19393600	Strong transcription	Fetal Intestine Large	intestine
5	chr10:19391800-19392600	Strong transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links