Variant report

Variant	esv3504390
Chromosome Location	chr10:26180932-26181311
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:26178024..26180350-chr10:26180527..26183342,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 40 )

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs553571077	chr10:26180943-26180944	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs117928620	chr10:26180947-26180948	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs539358184	chr10:26180962-26180963	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs555839105	chr10:26180990-26180991	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs71495490	chr10:26181014-26181015	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs111548769	chr10:26181027-26181028	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs112763798	chr10:26181039-26181040	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs546527555	chr10:26181117-26181118	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs113541604	chr10:26181129-26181130	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs572198090	chr10:26181142-26181143	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs540797860	chr10:26181145-26181146	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs560678580	chr10:26181159-26181160	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs530215850	chr10:26181178-26181179	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs12244096	chr10:26181206-26181207	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs12258431	chr10:26181223-26181224	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs563080387	chr10:26181228-26181229	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs12251813	chr10:26181254-26181255	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs114257545	chr10:26181258-26181259	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs115129897	chr10:26181262-26181263	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs568514973	chr10:26181265-26181266	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs34828805	chr10:26181280-26181281	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs117354453	chr10:26181299-26181300	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:40)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Behavioral abnormalities	21522184	CNVD
Dysmorphic features	21522184	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Myelofibrosis	22110671	CNVD
Autism	21439084	CNVD
Maculopathy	20981449	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioblastoma multiforme	21525872	CNVD
Adrenocortical carcinoma	18281524	CNVD

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26178800-26184800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr10:26180400-26181000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:26180800-26184800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:26181000-26185600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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