Variant report
| Variant | esv3504391 |
|---|---|
| Chromosome Location | chr10:26180985-26181252 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:26178024..26180350-chr10:26180527..26183342,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs555839105 | chr10:26180990-26180991 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs71495490 | chr10:26181014-26181015 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 3 | rs111548769 | chr10:26181027-26181028 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs112763798 | chr10:26181039-26181040 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs546527555 | chr10:26181117-26181118 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs113541604 | chr10:26181129-26181130 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs572198090 | chr10:26181142-26181143 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs540797860 | chr10:26181145-26181146 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs560678580 | chr10:26181159-26181160 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs530215850 | chr10:26181178-26181179 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs12244096 | chr10:26181206-26181207 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs12258431 | chr10:26181223-26181224 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 13 | rs563080387 | chr10:26181228-26181229 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:40)
| Disease | PMID | Source |
|---|---|---|
| Breast cancer | 17133270 | CNVD |
| Endometrioid adenocarcinoma | 16974079 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Phyllodes tumor | 17334353 | CNVD |
| Acute lymphoblastic leukemia | 17690704 | CNVD |
| Pancreatic endocrine tumor | 17639061 | CNVD |
| Gastric cancer | 17908304 | CNVD |
| Chordoma | 21602918 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Melanoma | 18172304 | CNVD |
| Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Ewing''s sarcoma | 17952124 | CNVD |
| Oral cancer | 21386901 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Breast cancer | 21858162 | CNVD |
| Acute lymphoblastic leukemia | 20724749 | CNVD |
| Autism | 22495311 | CNVD |
| T-cell lymphomas | 19863542 | CNVD |
| Esophageal cancer | 21851588 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Behavioral abnormalities | 21522184 | CNVD |
| Dysmorphic features | 21522184 | CNVD |
| low-grade B-cell lymphoma tumor | 18367492 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Autism | 21439084 | CNVD |
| Maculopathy | 20981449 | CNVD |
| Ovine squamous-cell carcinoma | 17599052 | CNVD |
| T-cell acute lymphoblastic leukemia | 18185524 | CNVD |
| Oral squamous cell carcinoma | 17134496 | CNVD |
| Glioblastoma multiforme | 21525872 | CNVD |
| Adrenocortical carcinoma | 18281524 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:26178800-26184800 | Weak transcription | HUES48 Cell Line | embryonic stem cell |
| 2 | chr10:26180400-26181000 | ZNF genes & repeats | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 3 | chr10:26180800-26184800 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
| 4 | chr10:26181000-26185600 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
