Variant report

Variant	esv3505510
Chromosome Location	chr11:4802410-4802904
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	11:4801044-4820112..11:5700314-5707362	H1-hESC	embryonic stem cell:	embryo

Variant related genes	Relation type
ENSG00000132256	chromatin interactions

Extended variants
information (count: 28 )
Associated
traits (count: 64 )

Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs551677458	chr11:4802420-4802421	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs183063986	chr11:4802429-4802430	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs534485191	chr11:4802433-4802434	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs187032846	chr11:4802461-4802462	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs549603379	chr11:4802477-4802478	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs2898965	chr11:4802483-4802484	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs537980651	chr11:4802534-4802535	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs556259436	chr11:4802544-4802545	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs571286658	chr11:4802568-4802569	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs558704713	chr11:4802570-4802571	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs538592155	chr11:4802583-4802584	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs11033849	chr11:4802631-4802632	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs190325936	chr11:4802640-4802641	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs373897185	chr11:4802649-4802650	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs572344816	chr11:4802663-4802664	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs542554680	chr11:4802667-4802668	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs576157979	chr11:4802669-4802670	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs554777170	chr11:4802734-4802735	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs538832227	chr11:4802740-4802741	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs576138787	chr11:4802758-4802759	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs558768592	chr11:4802779-4802780	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs369219069	chr11:4802829-4802830	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs373488928	chr11:4802830-4802831	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs375618719	chr11:4802831-4802832	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs369997302	chr11:4802832-4802833	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs2898964	chr11:4802858-4802859	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs562613068	chr11:4802881-4802882	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs2412433	chr11:4802903-4802904	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:64)

Disease	PMID	Source
Neuroblastoma	18923191	CNVD
Breast cancer	19432969	CNVD
Alzheimer''s disease	17576883	CNVD
Long-qt syndrome	17576883	CNVD
Emphysema	19352772	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Chordoma	18071362	CNVD
Breast cancer	16608533	CNVD
Cancer	21183584	CNVD
Gastric adenocarcinoma	19115996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Burkitt''s lymphoma	19759907	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Thyroid cancer	19087340	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Wilms tumour	21544195	CNVD
Parathyroid adenoma	22454399	CNVD
Chordoma	21602918	CNVD
Breast cancer	21949216	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	19222835	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Beckwith-Wiedemann syndrome	21518781	CNVD
Wilms tumour	21518781	CNVD
Hepatoblastoma	21518781	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastric cancer	17908304	CNVD
Barrett''s syndrome	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Lung cancer	18438408	CNVD
Autism	22495311	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Myelofibrosis	22110671	CNVD
Glioma	17123091	CNVD
Lung cancer	16773561	CNVD
Neuroblastoma	21124317	CNVD
Lung adenocarcinoma	17086460	CNVD
Lung cancer	17086460	CNVD
Schizophrenia	21399695	CNVD
Gastric cancer	16891809	CNVD
Cancer	17160897	CNVD
Multiple myeloma	16616336	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21364760	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	22522925	CNVD
Bipolar disorder	19114987	CNVD
Schizophrenia	20967226	CNVD
Schizophrenia	23813976	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links