Variant report

Variant	esv3506424
Chromosome Location	chr10:769246-770021
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 101 )
Associated
traits (count: 53 )

Variant overlapped rSNPs/rCNVs (count:101 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs78897485	chr10:769255-769256	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs71376853	chr10:769270-769271	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs9419544	chr10:769292-769293	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs546463306	chr10:769293-769294	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs145032959	chr10:769299-769300	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs1769229	chr10:769304-769305	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs2766016	chr10:769310-769311	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs2790384	chr10:769316-769317	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs2790383	chr10:769322-769323	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs2790382	chr10:769333-769334	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs561838203	chr10:769339-769340	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs111235518	chr10:769356-769357	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs572164245	chr10:769368-769369	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs111568200	chr10:769369-769370	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs1617177	chr10:769374-769375	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs540884691	chr10:769377-769378	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs111884458	chr10:769381-769382	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs111868248	chr10:769382-769383	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs71494929	chr10:769388-769389	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs71494930	chr10:769394-769395	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs71494931	chr10:769400-769401	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs71494932	chr10:769411-769412	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs71494933	chr10:769434-769435	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs564142003	chr10:769441-769442	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs113828368	chr10:769447-769448	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs11253358	chr10:769452-769453	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs11253359	chr10:769459-769460	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs111733319	chr10:769460-769461	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs112197840	chr10:769466-769467	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs111931233	chr10:769472-769473	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs111956959	chr10:769478-769479	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs112040048	chr10:769489-769490	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs113696275	chr10:769512-769513	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs533089863	chr10:769513-769514	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs71489281	chr10:769525-769526	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs71489282	chr10:769530-769531	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs71489283	chr10:769533-769534	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs71489284	chr10:769537-769538	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs368998474	chr10:769538-769539	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs71489285	chr10:769544-769545	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs71489286	chr10:769550-769551	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs549787962	chr10:769555-769556	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs71489287	chr10:769556-769557	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs71489288	chr10:769567-769568	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs112778753	chr10:769590-769591	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs71489289	chr10:769603-769604	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs186342867	chr10:769607-769608	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs113492324	chr10:769608-769609	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs7085733	chr10:769615-769616	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs71489290	chr10:769622-769623	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:53)

Disease	PMID	Source
Cancer	20164920	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	20409316	CNVD
Gastric adenocarcinoma	19115996	CNVD
Pilocytic astrocytoma	18622384	CNVD
Pilomyxoid astrocytoma	18622384	CNVD
Breast cancer	17133270	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Cancer	21129771	CNVD
Sudden cardiac death	19188705	CNVD
Digeorge syndrome	22283845	CNVD
Colorectal cancer	20709793	CNVD
Wilms tumour	19047088	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Barakat syndrome	22470819	CNVD
Melanoma	18172304	CNVD
Ovarian cancer	21720365	CNVD
Autism	18414403	CNVD
Malignant melanoma	18718029	CNVD
Breast cancer	22032731	CNVD
Medulloblastoma	16783165	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Melanoma	17363583	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21785460	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21509527	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Glioblastoma multiforme	21525872	CNVD
Breast cancer	21858162	CNVD
Obesity	19966786	CNVD

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:764800-772000	Weak transcription	Right Atrium	heart
2	chr10:768600-770000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:768600-771400	Weak transcription	Spleen	Spleen
4	chr10:769000-771600	Weak transcription	Placenta	Placenta
5	chr10:770000-770200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:770000-770200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:770000-770400	Enhancers	Pancreas	Pancrea

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