Variant report

Variant	esv3506838
Chromosome Location	chr19:21634362-21639360
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:12)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:21637958..21640581-chr19:21645162..21647289,2	K562	blood:

(count:12 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF708-2	chr19:21639263-21639390	ENSG00000268119.1
2	lnc-ZNF708-2	chr19:21635998-21636579	ENSG00000268119.1
3	lnc-ZNF708-2	chr19:21635828-21636081	ENSG00000268119.1
4	lnc-ZNF708-2	chr19:21639263-21639390	ENSG00000268119.1
5	lnc-ZNF708-2	chr19:21639263-21639390	ENSG00000268119.1
6	lnc-ZNF708-2	chr19:21636352-21636579	ENSG00000268119.1
7	lnc-ZNF708-2	chr19:21636352-21636579	ENSG00000268119.1
8	lnc-ZNF708-2	chr19:21637185-21637274	ENSG00000268119.1
9	lnc-ZNF708-2	chr19:21637185-21637274	ENSG00000268119.1
10	lnc-ZNF708-2	chr19:21637185-21637274	ENSG00000268119.1
11	lnc-ZNF708-2	chr19:21638133-21638406	ENSG00000268119.1
12	lnc-ZNF708-2	chr19:21639263-21639390	ENSG00000268119.1

No data

Variant related genes	Relation type
ENSG00000268119	chromatin interactions

Extended variants
information (count: 181 )
Associated
traits (count: 38 )

Variant overlapped rSNPs/rCNVs (count:181 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs542599437	chr19:21634399-21634400	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs147097881	chr19:21634416-21634417	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs372992731	chr19:21634437-21634438	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs528482013	chr19:21634488-21634489	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs547045915	chr19:21634509-21634510	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs182092461	chr19:21634548-21634549	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs532678652	chr19:21634554-21634555	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs62111473	chr19:21634619-21634620	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs372971524	chr19:21634648-21634649	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs551191594	chr19:21634699-21634700	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs8106025	chr19:21634724-21634725	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
12	rs536908854	chr19:21634726-21634727	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs548602130	chr19:21634729-21634730	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs567225404	chr19:21634787-21634788	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs535051258	chr19:21634790-21634791	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs551172648	chr19:21634798-21634799	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs71176874	chr19:21634841-21634842	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs372018124	chr19:21634858-21634859	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs34447470	chr19:21634901-21634902	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs552585068	chr19:21634910-21634911	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs60083403	chr19:21634949-21634950	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs538394170	chr19:21634950-21634951	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs556731188	chr19:21634973-21634974	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs138462022	chr19:21635008-21635009	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs542862953	chr19:21635026-21635027	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs561050884	chr19:21635035-21635036	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs573123667	chr19:21635047-21635048	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs141904453	chr19:21635117-21635118	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs150209670	chr19:21635135-21635136	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs565324183	chr19:21635221-21635222	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs533410154	chr19:21635242-21635243	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs537684692	chr19:21635243-21635244	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs551103212	chr19:21635268-21635269	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs2937167	chr19:21635277-21635278	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs563023935	chr19:21635280-21635281	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs2937166	chr19:21635301-21635302	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs374446411	chr19:21635318-21635319	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs114676160	chr19:21635332-21635333	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs567579739	chr19:21635346-21635347	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs2650801	chr19:21635355-21635356	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
41	rs534537974	chr19:21635365-21635366	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs546186756	chr19:21635421-21635422	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs138725584	chr19:21635423-21635424	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs35895811	chr19:21635454-21635455	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs138075712	chr19:21635455-21635456	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs71176875	chr19:21635457-21635458	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs556643424	chr19:21635520-21635521	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs540528770	chr19:21635538-21635539	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs73551246	chr19:21635542-21635543	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs546529152	chr19:21635569-21635570	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:38)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Prostate cancer	16573809	CNVD
Chordoma	18071362	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
ovarian endometriomas	16273235	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Cervical cancer	21063398	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Lung cancer	18438408	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Colorectal cancer	20459617	CNVD
small cell lung cancer	20016488	CNVD
Ductal carcinoma	22052326	CNVD

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:21624600-21636400	Weak transcription	Fetal Kidney	kidney
2	chr19:21629800-21641400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
3	chr19:21630000-21642000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
4	chr19:21630200-21634600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr19:21630200-21643800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr19:21630400-21635400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr19:21630400-21643800	ZNF genes & repeats	Dnd41	blood
8	chr19:21630800-21635000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
9	chr19:21631000-21634600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
10	chr19:21631000-21638400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr19:21631400-21635200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
12	chr19:21631400-21635400	ZNF genes & repeats	Fetal Brain Female	brain
13	chr19:21631600-21634600	ZNF genes & repeats	Fetal Stomach	stomach
14	chr19:21631800-21638200	ZNF genes & repeats	Fetal Intestine Small	intestine
15	chr19:21632000-21637200	Weak transcription	Primary T cells from cord blood	blood
16	chr19:21632200-21634600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr19:21632200-21637000	Weak transcription	Fetal Lung	lung
18	chr19:21632200-21638000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr19:21632200-21638000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr19:21632400-21635800	Weak transcription	Thymus	Thymus
21	chr19:21632400-21637000	Weak transcription	Ovary	ovary
22	chr19:21633200-21634600	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
23	chr19:21633400-21634600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr19:21633400-21634800	ZNF genes & repeats	Brain Germinal Matrix	brain
25	chr19:21633400-21635200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
26	chr19:21633600-21637000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr19:21633800-21634400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
28	chr19:21633800-21634400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr19:21633800-21634600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr19:21633800-21634600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
31	chr19:21633800-21634600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
32	chr19:21633800-21641400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr19:21633800-21641400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr19:21634200-21634600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
35	chr19:21634400-21636400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr19:21634600-21635400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr19:21634600-21635600	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr19:21634600-21635600	Weak transcription	Primary hematopoietic stem cells	blood
39	chr19:21634600-21635800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr19:21634600-21635800	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr19:21634600-21636400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr19:21634600-21636400	Weak transcription	Fetal Stomach	stomach
43	chr19:21634600-21636600	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr19:21634600-21637400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr19:21634600-21641600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr19:21634800-21635600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr19:21634800-21636400	Weak transcription	Brain Germinal Matrix	brain
48	chr19:21634800-21637400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr19:21635000-21635600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
50	chr19:21635200-21635800	Strong transcription	H1 Cell Line	embryonic stem cell

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