Variant report

Variant	esv3507568
Chromosome Location	chr6:86622783-86627431
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 104 )

Variant overlapped rSNPs/rCNVs (count:50 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs573050839	chr6:86622833-86622834	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs150543967	chr6:86622856-86622857	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs551164143	chr6:86622877-86622878	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs566520428	chr6:86622922-86622923	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs184392007	chr6:86622927-86622928	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs189817594	chr6:86622928-86622929	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs139508917	chr6:86622929-86622930	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs181465895	chr6:86622947-86622948	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs371869880	chr6:86622960-86622961	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs538949759	chr6:86623008-86623009	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs549758001	chr6:86623068-86623069	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs571370906	chr6:86623100-86623101	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs149677792	chr6:86623107-86623108	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs376928622	chr6:86623151-86623152	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs554424436	chr6:86623189-86623190	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs572587035	chr6:86623196-86623197	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs536832670	chr6:86623205-86623206	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs555010434	chr6:86623217-86623218	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs375725717	chr6:86623299-86623300	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs145459547	chr6:86623306-86623307	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs184271672	chr6:86623349-86623350	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs543419854	chr6:86623399-86623400	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs564888572	chr6:86623402-86623403	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs376438221	chr6:86623431-86623432	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs558964299	chr6:86623435-86623436	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs6915248	chr6:86623468-86623469	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs575734491	chr6:86623471-86623472	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs371229318	chr6:86623496-86623497	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs113180724	chr6:86623513-86623514	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs576663309	chr6:86623569-86623570	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs373340894	chr6:86623570-86623571	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs527520484	chr6:86623582-86623583	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs7752222	chr6:86623592-86623593	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
34	rs561038365	chr6:86623599-86623600	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs189060466	chr6:86623665-86623666	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs74730612	chr6:86623692-86623693	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs571231506	chr6:86623695-86623696	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs7772723	chr6:86623698-86623699	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
39	rs112181870	chr6:86623709-86623710	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs181583468	chr6:86623763-86623764	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs561470648	chr6:86623772-86623773	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs536487339	chr6:86623776-86623777	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs555103399	chr6:86623777-86623778	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs376937264	chr6:86623834-86623835	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs369136074	chr6:86623835-86623836	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs372543422	chr6:86623836-86623837	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs376355724	chr6:86623837-86623838	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs76207505	chr6:86623906-86623907	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs537319574	chr6:86623943-86623944	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs78462252	chr6:86623986-86623987	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:104)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Autism	22495311	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Lung adenocarcinoma	21935476	CNVD
Prostate cancer	16461572	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Acute lymphoblastic leukemia	17640729	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Cancer	21183584	CNVD
craniofacial dysmorphism	21918468	CNVD
Myelofibrosis	22110671	CNVD
Neurodevelopmental disorder	22521361	CNVD
abnormal development	18461090	CNVD
Myelodysplastic syndrome	18508791	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Breast cancer	21364760	CNVD
Schizophrenia	20967226	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:86618800-86624000	Weak transcription	Pancreas	Pancrea

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