Variant report
| Variant | esv3508061 |
|---|---|
| Chromosome Location | chr11:58809282-58809637 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs373420926 | chr11:58809303-58809304 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs377054015 | chr11:58809304-58809305 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs368756361 | chr11:58809305-58809306 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs564062009 | chr11:58809336-58809337 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs528227027 | chr11:58809364-58809365 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs61891798 | chr11:58809408-58809409 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs111523517 | chr11:58809448-58809449 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs546354342 | chr11:58809465-58809466 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs377138368 | chr11:58809561-58809562 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs201327352 | chr11:58809570-58809571 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs373835915 | chr11:58809613-58809614 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs377510092 | chr11:58809614-58809615 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs370982497 | chr11:58809615-58809616 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 14 | rs375019698 | chr11:58809616-58809617 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 15 | rs376719497 | chr11:58809617-58809618 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 16 | rs59246337 | chr11:58809619-58809620 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:52)
| Disease | PMID | Source |
|---|---|---|
| Medulloblastoma | 21979893 | CNVD |
| Gastric cancer | 17908304 | CNVD |
| Multiple myeloma | 20724749 | CNVD |
| Wilms tumour | 21544195 | CNVD |
| Autism | 22495311 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Non-small cell lung cancer | 21385341 | CNVD |
| Intellectual disability | 22102821 | CNVD |
| Glioblastoma multiforme | 21138945 | CNVD |
| Esophageal cancer | 21851588 | CNVD |
| Acute myeloid leukemia | 20729466 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Glioblastoma multiforme | 22286061 | CNVD |
| Acute lymphoblastic leukemia | 20067559 | CNVD |
| Cancer | 21637783 | CNVD |
| Acute myeloid leukemia | 16864856 | CNVD |
| Chronic lymphocytic leukemia | 21795749 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Neuroblastoma | 21484798 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Oral cancer | 21386901 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Breast cancer | 20837533 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Cervical cancer | 21063398 | CNVD |
| Glioblastoma multiforme | 19960244 | CNVD |
| Liposarcoma | 21253554 | CNVD |
| Neuroblastoma | 18923524 | CNVD |
| Neuroblastoma | 18664255 | CNVD |
| Monoclonal gammopathy of undetermined significance | 17077331 | CNVD |
| Multiple myeloma | 17077331 | CNVD |
| Neuroblastoma | 17533364 | CNVD |
| Breast cancer | 21364760 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Colorectal cancer | 16272173 | CNVD |
| Esophageal squamous carcinoma | 18350619 | CNVD |
| Pituitary adenoma | 18645599 | CNVD |
| Basal cell lymphoma | 16317097 | CNVD |
| Diffuse large b-cell lymphoma | 16317097 | CNVD |
| Prostate cancer | 18632612 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Smith-Lemli-Opitz syndrome | 21572526 | CNVD |
| Multiple myeloma | 16461302 | CNVD |
| Cancer | 16751803 | CNVD |
| Seminomas | 18059402 | CNVD |
| Autism | 22495309 | CNVD |
| Autism | 20808228 | CNVD |
| Cancer | 20164919 | CNVD |
| Non-syndromic sensorineural hearing loss | 18451855 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:58782800-58810600 | Weak transcription | Primary B cells from cord blood | blood |
| 2 | chr11:58805000-58825200 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
| 3 | chr11:58805200-58825400 | Weak transcription | Primary hematopoietic stem cells | blood |
| 4 | chr11:58808000-58810800 | Weak transcription | Primary B cells from peripheral blood | blood |
