Variant report

Variant	esv3508199
Chromosome Location	chr9:110017856-110022181
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:110007992..110013194-chr9:110021107..110025881,5	MCF-7	breast:
2	chr9:110014211..110018622-chr9:110040932..110043716,4	MCF-7	breast:
3	chr9:110021032..110023010-chr9:110046369..110047881,2	MCF-7	breast:
4	chr9:110021549..110024530-chr9:110031690..110034147,2	MCF-7	breast:
5	chr9:110017405..110019153-chr9:110019371..110020959,2	MCF-7	breast:
6	chr9:110015966..110018595-chr9:110020108..110022273,3	MCF-7	breast:
7	chr9:110017405..110019153-chr9:110019371..110020959,2	MCF-7	breast:
8	chr9:110015966..110018595-chr9:110020108..110022273,3	MCF-7	breast:
9	chr9:110021248..110023658-chr9:110046181..110048340,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RAD23B-3	chr9:110017675-110017878	XLOC_007504

No data

Variant related genes	Relation type
ENSG00000119318	chromatin interactions
MRPS34	miRNA target sites

Extended variants
information (count: 110 )
Associated
traits (count: 59 )

Variant overlapped rSNPs/rCNVs (count:110 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs576397001	chr9:110017861-110017862	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
2	rs147502624	chr9:110017866-110017867	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
3	rs10816476	chr9:110017886-110017887	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs192911642	chr9:110017912-110017913	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs183897964	chr9:110017924-110017925	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs548883276	chr9:110017925-110017926	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs559155634	chr9:110017929-110017930	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs10122970	chr9:110017948-110017949	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs544563335	chr9:110017964-110017965	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs562982577	chr9:110017968-110017969	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs531104873	chr9:110018011-110018012	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs549291669	chr9:110018020-110018021	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs111949333	chr9:110018021-110018022	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs112569642	chr9:110018029-110018030	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs528653221	chr9:110018048-110018049	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs150543518	chr9:110018144-110018145	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs571611316	chr9:110018187-110018188	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs532682219	chr9:110018199-110018200	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs202217177	chr9:110018256-110018257	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs200432070	chr9:110018283-110018284	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs10978773	chr9:110018287-110018288	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs374775653	chr9:110018306-110018307	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs13284543	chr9:110018319-110018320	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs7870894	chr9:110018327-110018328	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs9696210	chr9:110018329-110018330	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs71368006	chr9:110018331-110018332	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs550992700	chr9:110018345-110018346	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs28667796	chr9:110018354-110018355	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs550519209	chr9:110018844-110018845	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs113506220	chr9:110019215-110019216	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs55959626	chr9:110020132-110020133	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs547864827	chr9:110020154-110020155	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs547150340	chr9:110020207-110020208	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs572319146	chr9:110020247-110020248	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs561390994	chr9:110020274-110020275	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs565457983	chr9:110020277-110020278	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs576991411	chr9:110020305-110020306	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs545908104	chr9:110020343-110020344	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs568700268	chr9:110020364-110020365	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs4250429	chr9:110020417-110020418	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs28545171	chr9:110020438-110020439	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs28433544	chr9:110020525-110020526	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs28687405	chr9:110020562-110020563	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs28646176	chr9:110020615-110020616	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs28681278	chr9:110020638-110020639	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs569303142	chr9:110020647-110020648	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs537327991	chr9:110020650-110020651	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs555667267	chr9:110020654-110020655	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs28472873	chr9:110020668-110020669	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs28744681	chr9:110020676-110020677	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:59)

Disease	PMID	Source
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Leukemia	18688285	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral cancer	21386901	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Gastric cancer	17908304	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
small cell lung cancer	20016488	CNVD
Cardiac fibroma	18329553	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Fukuyama congenital muscular dystrophy	21572526	CNVD
Testicular germ cell tumor	18059402	CNVD
Intracranial aneurysm	16715129	CNVD
Breast cancer	21364760	CNVD
Developmental delay	21147756	CNVD
Barrett''s adenocarcinoma	18663352	CNVD

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110007000-110022600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:110012400-110022600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr9:110014800-110021400	Weak transcription	Adipose Nuclei	Adipose
4	chr9:110014800-110022800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr9:110015400-110022600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr9:110017000-110018400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr9:110017200-110022600	Weak transcription	HSMMtube	muscle
8	chr9:110017600-110018000	Enhancers	Pancreas	Pancrea
9	chr9:110017600-110018200	Enhancers	HepG2	liver
10	chr9:110018200-110018400	Enhancers	Primary T cells from cord blood	blood
11	chr9:110018200-110018400	Enhancers	Primary hematopoietic stem cells	blood
12	chr9:110018200-110022400	Weak transcription	HepG2	liver
13	chr9:110020800-110022600	Weak transcription	NHDF-Ad	bronchial
14	chr9:110021000-110023800	Enhancers	Liver	Liver
15	chr9:110021400-110021600	Enhancers	Adipose Nuclei	Adipose
16	chr9:110021400-110022600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr9:110021400-110024000	Enhancers	Primary B cells from peripheral blood	blood
18	chr9:110021600-110022600	Weak transcription	Adipose Nuclei	Adipose
19	chr9:110021800-110022600	Enhancers	Primary B cells from cord blood	blood
20	chr9:110022000-110022200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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