Variant report

Variant	esv3512740
Chromosome Location	chr10:39138890-39149861
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1849 )
Associated
traits (count: 39 )

Variant overlapped rSNPs/rCNVs (count:1849 , 50 per page) page: 1 2 3 4 5 6 7 ... 37

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs76937695	chr10:39138891-39138892	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs61827652	chr10:39138896-39138897	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs61827653	chr10:39138905-39138906	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs74362944	chr10:39138910-39138911	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs61827654	chr10:39138914-39138915	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs201892825	chr10:39138920-39138921	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs61827655	chr10:39138926-39138927	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs80293580	chr10:39138935-39138936	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs572353240	chr10:39138944-39138945	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs550132308	chr10:39138945-39138946	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs569954195	chr10:39138956-39138957	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs538681511	chr10:39138959-39138960	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs74327368	chr10:39138961-39138962	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs368080902	chr10:39138965-39138966	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs552152537	chr10:39138970-39138971	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs149962206	chr10:39138971-39138972	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs565773992	chr10:39138979-39138980	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs141262998	chr10:39138980-39138981	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs554368630	chr10:39138985-39138986	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs138981532	chr10:39138986-39138987	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs144531414	chr10:39138988-39138989	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs144184367	chr10:39138990-39138991	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs536435064	chr10:39138993-39138994	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs36138364	chr10:39138996-39138997	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs143363734	chr10:39138999-39139000	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs142826896	chr10:39139001-39139002	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs144073020	chr10:39139007-39139008	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs77587870	chr10:39139011-39139012	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs140700710	chr10:39139019-39139020	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs77622415	chr10:39139020-39139021	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs148320396	chr10:39139023-39139024	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs558639803	chr10:39139026-39139027	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs149874370	chr10:39139031-39139032	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs142123500	chr10:39139045-39139046	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs141115289	chr10:39139046-39139047	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs141800024	chr10:39139048-39139049	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs541193981	chr10:39139059-39139060	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs561416421	chr10:39139063-39139064	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs529954471	chr10:39139064-39139065	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs543637392	chr10:39139065-39139066	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs563575293	chr10:39139070-39139071	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs532403914	chr10:39139076-39139077	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs552168370	chr10:39139094-39139095	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs74219962	chr10:39139100-39139101	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs186719946	chr10:39139105-39139106	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs565513646	chr10:39139114-39139115	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs561282742	chr10:39139115-39139116	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs548016571	chr10:39139124-39139125	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs201557476	chr10:39139129-39139130	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs111949305	chr10:39139136-39139137	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:39)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	20459617	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Central neurocytomas	17123091	CNVD
Neurocytoma	17123091	CNVD
small cell lung cancer	20016488	CNVD
Myelofibrosis	22110671	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	21509527	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD

Chromatin state (count:174 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:39076400-39155000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
2	chr10:39076600-39154600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
3	chr10:39076600-39154800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
4	chr10:39076600-39154800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
5	chr10:39076600-39154800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
6	chr10:39076600-39154800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
7	chr10:39076600-39154800	ZNF genes & repeats	Adipose Nuclei	Adipose
8	chr10:39076600-39155000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
9	chr10:39076600-39155000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:39076600-39155000	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr10:39076600-39155000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
12	chr10:39076600-39155000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
13	chr10:39076600-39155000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
14	chr10:39076600-39155000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
15	chr10:39076600-39155000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
16	chr10:39076600-39155000	ZNF genes & repeats	Primary T cells from cord blood	blood
17	chr10:39076600-39155000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
18	chr10:39076600-39155000	ZNF genes & repeats	Liver	Liver
19	chr10:39076600-39155000	ZNF genes & repeats	Brain Hippocampus Middle	brain
20	chr10:39076600-39155000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
21	chr10:39076600-39155000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
22	chr10:39076600-39155000	ZNF genes & repeats	Fetal Brain Male	brain
23	chr10:39076600-39155000	ZNF genes & repeats	Fetal Lung	lung
24	chr10:39076600-39155000	ZNF genes & repeats	Dnd41	blood
25	chr10:39076600-39155000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
26	chr10:39076800-39152800	ZNF genes & repeats	Primary B cells from cord blood	blood
27	chr10:39076800-39154800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
28	chr10:39077200-39155000	ZNF genes & repeats	Gastric	stomach
29	chr10:39093800-39155000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
30	chr10:39096000-39142000	ZNF genes & repeats	Rectal Smooth Muscle	rectum
31	chr10:39102800-39154800	ZNF genes & repeats	Brain Anterior Caudate	brain
32	chr10:39102800-39155000	ZNF genes & repeats	Fetal Heart	heart
33	chr10:39103000-39155000	ZNF genes & repeats	Brain Substantia Nigra	brain
34	chr10:39104600-39154800	ZNF genes & repeats	Colonic Mucosa	Colon
35	chr10:39114000-39153600	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
36	chr10:39118600-39154600	ZNF genes & repeats	Fetal Kidney	kidney
37	chr10:39119000-39154800	ZNF genes & repeats	HepG2	liver
38	chr10:39122400-39147200	ZNF genes & repeats	K562	blood
39	chr10:39122400-39147600	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
40	chr10:39122400-39154800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr10:39122400-39155000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
42	chr10:39123200-39147400	ZNF genes & repeats	GM12878-XiMat	blood
43	chr10:39127200-39154800	ZNF genes & repeats	HUVEC	blood vessel
44	chr10:39128400-39144800	ZNF genes & repeats	Fetal Muscle Trunk	muscle
45	chr10:39133000-39154800	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
46	chr10:39135200-39147600	ZNF genes & repeats	Brain Angular Gyrus	brain
47	chr10:39135200-39147600	ZNF genes & repeats	Colon Smooth Muscle	Colon
48	chr10:39135200-39155000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr10:39135200-39155000	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
50	chr10:39135600-39142000	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood

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