Variant report

Variant	esv3514439
Chromosome Location	chr2:36731361-36734052
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:36726450..36728384-chr2:36733082..36736034,2	MCF-7	breast:
2	chr2:36730615..36732840-chr2:36733179..36736137,2	MCF-7	breast:
3	chr2:36730615..36732840-chr2:36733179..36736137,2	MCF-7	breast:
4	chr2:36730697..36732270-chr2:36732396..36733939,2	MCF-7	breast:
5	chr2:36581721..36584860-chr2:36733374..36737959,4	MCF-7	breast:
6	chr2:36730697..36732270-chr2:36732396..36733939,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150938	chromatin interactions
ENSG00000260025	chromatin interactions

Extended variants
information (count: 120 )
Associated
traits (count: 59 )

Variant overlapped rSNPs/rCNVs (count:120 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs955601	chr2:36731377-36731378	Weak transcription Strong transcription Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs955602	chr2:36731385-36731386	Weak transcription Strong transcription Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs181510384	chr2:36731397-36731398	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs546576281	chr2:36731416-36731417	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs369101385	chr2:36731438-36731439	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs373134923	chr2:36731449-36731450	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs376316677	chr2:36731459-36731460	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs556810452	chr2:36731519-36731520	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs571349654	chr2:36731539-36731540	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs532835221	chr2:36731579-36731580	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs370719166	chr2:36731610-36731611	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs139236913	chr2:36731615-36731616	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs368096762	chr2:36731618-36731619	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs185305140	chr2:36731630-36731631	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs190012754	chr2:36731648-36731649	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs575021386	chr2:36731649-36731650	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs567346976	chr2:36731658-36731659	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs371954986	chr2:36731659-36731660	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs373983638	chr2:36731703-36731704	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs534742585	chr2:36731706-36731707	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs565844012	chr2:36731714-36731715	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs711249	chr2:36731860-36731861	Weak transcription Strong transcription Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
23	rs554994875	chr2:36731867-36731868	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs556295261	chr2:36731915-36731916	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs17018932	chr2:36731919-36731920	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs376905909	chr2:36731936-36731937	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs145953951	chr2:36731962-36731963	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs538174087	chr2:36731982-36731983	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs556207009	chr2:36732047-36732048	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs711248	chr2:36732072-36732073	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs560785235	chr2:36732114-36732115	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs848529	chr2:36732171-36732172	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs139467063	chr2:36732206-36732207	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs182329982	chr2:36732245-36732246	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs532360326	chr2:36732257-36732258	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs550966584	chr2:36732265-36732266	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs117824069	chr2:36732288-36732289	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs530451776	chr2:36732289-36732290	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs36057827	chr2:36732317-36732318	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs567109414	chr2:36732353-36732354	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs148449543	chr2:36732360-36732361	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs546679050	chr2:36732388-36732389	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs142633225	chr2:36732415-36732416	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs538229419	chr2:36732447-36732448	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs848528	chr2:36732494-36732495	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs575436054	chr2:36732528-36732529	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs536189511	chr2:36732535-36732536	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs112039330	chr2:36732584-36732585	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs186288700	chr2:36732609-36732610	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs372047087	chr2:36732671-36732672	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:59)

Disease	PMID	Source
Breast cancer	17393978	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Lynch syndrome	18415027	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Ovarian neoplasms	16753589	CNVD
Glioblastoma multiforme	17387387	CNVD
Neuroblastoma	17533364	CNVD
Neuroblastoma	18923191	CNVD
Endometrial cancer	22040021	CNVD
Adrenal tumor	17535989	CNVD
Breast cancer	21264507	CNVD
Basal cell lymphoma	17053054	CNVD
Medulloblastoma	17522785	CNVD
Cancer	23418310	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Ependymoma	16718352	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Prostate cancer	18632612	CNVD
Bladder cancer	21909424	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Intellectual disability	22102821	CNVD
Cancer	20164919	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	20505157	CNVD
Autism	17483303	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Medulloblastoma	20607354	CNVD
Leukemia	18628472	CNVD
Autism	19521722	CNVD
Autism	18522746	CNVD
Breast cancer	21364760	CNVD
Wilms tumour	21544195	CNVD
Non-small cell lung cancer	18927303	CNVD
Breast cancer	21785460	CNVD
Lung cancer	18438408	CNVD
Prostate cancer	21965145	CNVD
Breast cancer	16397240	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21508638	CNVD
Neurodevelopmental disorder	22521361	CNVD
Neurocytoma	17123091	CNVD
small cell lung cancer	20016488	CNVD
Melanoma	18172304	CNVD
Cancer	16751803	CNVD
T-cell lymphomas	22341440	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:170 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36704800-36736200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:36705000-36743200	Weak transcription	Brain Germinal Matrix	brain
3	chr2:36707000-36740600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:36708600-36739000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:36709200-36739000	Weak transcription	Colonic Mucosa	Colon
6	chr2:36710000-36743400	Weak transcription	Primary T cells from cord blood	blood
7	chr2:36711400-36739200	Weak transcription	Primary B cells from cord blood	blood
8	chr2:36713000-36733200	Weak transcription	Pancreas	Pancrea
9	chr2:36713600-36739200	Weak transcription	Fetal Muscle Leg	muscle
10	chr2:36713800-36733200	Weak transcription	Stomach Mucosa	stomach
11	chr2:36713800-36789600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr2:36717200-36733000	Genic enhancers	A549	lung
13	chr2:36717400-36744400	Weak transcription	Brain Angular Gyrus	brain
14	chr2:36720000-36734400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr2:36720000-36760600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr2:36720400-36739200	Weak transcription	Fetal Heart	heart
17	chr2:36720800-36739200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr2:36721400-36737200	Strong transcription	HSMM	muscle
19	chr2:36721800-36746000	Strong transcription	HUVEC	blood vessel
20	chr2:36722200-36734800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr2:36722400-36739800	Weak transcription	Brain Hippocampus Middle	brain
22	chr2:36722600-36752400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr2:36724000-36740600	Weak transcription	Psoas Muscle	Psoas
24	chr2:36724400-36731400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr2:36725000-36734000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr2:36725200-36731800	Strong transcription	HMEC	breast
27	chr2:36725200-36739200	Strong transcription	NH-A	brain
28	chr2:36725200-36756800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr2:36725400-36731400	Strong transcription	HSMMtube	muscle
30	chr2:36725400-36734800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr2:36725600-36734000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr2:36726000-36732400	Strong transcription	Fetal Intestine Large	intestine
33	chr2:36726200-36732000	Strong transcription	Hela-S3	cervix
34	chr2:36726200-36733800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr2:36726400-36732400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
36	chr2:36726400-36733800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr2:36726400-36734400	Strong transcription	Adipose Nuclei	Adipose
38	chr2:36726600-36731400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr2:36726600-36731400	Genic enhancers	Placenta	Placenta
40	chr2:36726800-36751800	Strong transcription	Skeletal Muscle Female	skeletal muscle
41	chr2:36727000-36734600	Genic enhancers	HepG2	liver
42	chr2:36727000-36739200	Weak transcription	Colon Smooth Muscle	Colon
43	chr2:36727000-36739600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr2:36727200-36739200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr2:36727400-36733200	Weak transcription	Gastric	stomach
46	chr2:36727400-36738400	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr2:36727400-36757200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr2:36727600-36731800	Strong transcription	NHDF-Ad	bronchial
49	chr2:36727600-36733000	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr2:36727600-36733000	Weak transcription	Lung	lung

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