Variant report
Variant | esv3515435 |
---|---|
Chromosome Location | chr6:142095753-142100127 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
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No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs574694827 | chr6:142095787-142095788 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
2 | rs182276125 | chr6:142095792-142095793 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
3 | rs372338828 | chr6:142095793-142095794 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
4 | rs550427342 | chr6:142095794-142095795 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
5 | rs187791497 | chr6:142095846-142095847 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
6 | rs538838444 | chr6:142095847-142095848 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs140692686 | chr6:142095852-142095853 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs77719078 | chr6:142095922-142095923 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs536311769 | chr6:142095941-142095942 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs192778076 | chr6:142095962-142095963 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs145900848 | chr6:142095980-142095981 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
12 | rs562603355 | chr6:142095988-142095989 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs370644476 | chr6:142095989-142095990 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
14 | rs565629883 | chr6:142096015-142096016 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
15 | rs368683342 | chr6:142096140-142096141 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
16 | rs543496337 | chr6:142096149-142096150 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
17 | rs369033841 | chr6:142096206-142096207 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs11155203 | chr6:142096269-142096270 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
19 | rs545323337 | chr6:142096299-142096300 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
20 | rs560363904 | chr6:142096319-142096320 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
21 | rs527501490 | chr6:142096341-142096342 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
22 | rs71550965 | chr6:142096462-142096463 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
23 | rs142643509 | chr6:142096463-142096464 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
24 | rs397806906 | chr6:142096465-142096466 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
25 | rs542731248 | chr6:142096511-142096512 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
26 | rs114875977 | chr6:142096528-142096529 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
27 | rs184850484 | chr6:142096541-142096542 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
28 | rs74452967 | chr6:142096547-142096548 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
29 | rs115375742 | chr6:142096549-142096550 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
30 | rs78468170 | chr6:142096552-142096553 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
31 | rs80022098 | chr6:142096556-142096557 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
32 | rs76937511 | chr6:142096572-142096573 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
33 | rs571232205 | chr6:142096616-142096617 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
34 | rs74889131 | chr6:142096648-142096649 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
35 | rs188563865 | chr6:142096654-142096655 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
36 | rs565919507 | chr6:142096666-142096667 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
37 | rs376702251 | chr6:142096673-142096674 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
38 | rs192172013 | chr6:142096680-142096681 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
39 | rs79892723 | chr6:142096687-142096688 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
40 | rs555041460 | chr6:142096695-142096696 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
41 | rs141866065 | chr6:142096697-142096698 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
42 | rs150635779 | chr6:142096705-142096706 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
43 | rs374087171 | chr6:142096712-142096713 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
44 | rs558629994 | chr6:142096730-142096731 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
45 | rs545586408 | chr6:142096762-142096763 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
46 | rs138842944 | chr6:142096822-142096823 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
47 | rs545291989 | chr6:142096825-142096826 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
48 | rs559834250 | chr6:142096940-142096941 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
49 | rs528558136 | chr6:142096960-142096961 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
50 | rs143123751 | chr6:142097084-142097085 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Uveal melanoma | 21693616 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Biliary cancer | 19435499 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Malaria | 21533027 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Ewing''s sarcoma | 17952124 | CNVD |
Autism | 21448237 | CNVD |
Autism | 22495311 | CNVD |
Biliary cancer | 20360734 | CNVD |
Breast cancer | 20360734 | CNVD |
Coronary artery disease | 20360734 | CNVD |
Crohn''s disease | 20360734 | CNVD |
Hypertension | 20360734 | CNVD |
Rheumatoid arthritis | 20360734 | CNVD |
Type 1 diabetes | 20360734 | CNVD |
Type 2 diabetes | 20360734 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Neuroblastoma | 18923191 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Melanoma | 18172304 | CNVD |
Cancer | 21637783 | CNVD |
Gastric cancer | 17908304 | CNVD |
lymphocytic leukemia | 21291569 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Follicular lymphoma | 19010834 | CNVD |
Non-small cell lung cancer | 21044232 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Hepatocellular carcinoma | 22174799 | CNVD |
Phyllodes tumor | 17334353 | CNVD |
Breast cancer | 16608533 | CNVD |
Non-small cell lung cancer | 21385341 | CNVD |
Prostate cancer | 16705090 | CNVD |
Adenoid cystic carcinoma | 17372589 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Ependymoma | 16718352 | CNVD |
High-proliferative meningiomas | 17937814 | CNVD |
Intracranial tumor | 16823260 | CNVD |
Monoclonal gammopathy of undetermined significance | 17077331 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Breast cancer | 16272173 | CNVD |
Wilms tumour | 21544195 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Zellweger syndrome | 21572526 | CNVD |
Follicular lymphoma | 20505157 | CNVD |
Congenital diaphragmatic hernia | 21085971 | CNVD |
Malignant melanoma | 18718029 | CNVD |
Acute lymphoblastic leukemia | 17690704 | CNVD |
Lung cancer | 18438408 | CNVD |
Breast cancer | 21858162 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Primary central nervous system lymphoma | 21088137 | CNVD |
Breast cancer | 17603634 | CNVD |
Chondromyxoid Fibroma | 20696777 | CNVD |
Cancer | 21183584 | CNVD |
Developmental delay | 19490664 | CNVD |
Burkitt''s lymphoma | 18698080 | CNVD |
Follicular lymphoma | 18703704 | CNVD |
Neurodevelopmental disorder | 22521361 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Adenoid cystic carcinoma | 18698036 | CNVD |
head and neck squamous cell carcinoma | 17671120 | CNVD |
Leukemia | 18688285 | CNVD |
Breast cancer | 21364760 | CNVD |
Renal cell carcinoma | 18592004 | CNVD |
T-cell prolymphocytic leukemia | 17713554 | CNVD |
Malignant melanoma | 17260012 | CNVD |
Prostate cancer | 18632612 | CNVD |
low-grade B-cell lymphoma tumor | 18367492 | CNVD |
Acute monocytic leukemia | 16498392 | CNVD |
Endocrine pancreatic tumor | 17914106 | CNVD |
Soft tissue tumor | 16732325 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Intellectual disability | 22045946 | CNVD |
craniofacial dysmorphism | 21918468 | CNVD |
Acute lymphoblastic leukemia | 21339820 | CNVD |
Non-syndromic sensorineural hearing loss | 18451855 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:142079800-142097600 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |