Variant report

Variant	esv3515493
Chromosome Location	chr12:40878222-40879707
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MUC19-1	chr12:40879237-40885130	NONHSAT027728
2	lnc-MUC19-1	chr12:40872855-40879178	NONHSAT027728

Extended variants
information (count: 96 )
Associated
traits (count: 58 )

Variant overlapped rSNPs/rCNVs (count:96 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs575929569	chr12:40878233-40878234	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
2	rs543480838	chr12:40878240-40878241	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
3	rs193020696	chr12:40878340-40878341	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
4	rs561958430	chr12:40878362-40878363	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
5	rs529152842	chr12:40878390-40878391	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
6	rs541344631	chr12:40878402-40878403	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
7	rs2588411	chr12:40878452-40878453	ZNF genes & repeats	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs2638866	chr12:40878482-40878483	ZNF genes & repeats	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs149850552	chr12:40878485-40878486	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
10	rs145879945	chr12:40878496-40878497	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
11	rs11176824	chr12:40878513-40878514	ZNF genes & repeats	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs549013865	chr12:40878532-40878533	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
13	rs11615962	chr12:40878548-40878549	ZNF genes & repeats	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs2588412	chr12:40878561-40878562	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
15	rs534949750	chr12:40878569-40878570	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
16	rs547294019	chr12:40878623-40878624	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
17	rs571726151	chr12:40878625-40878626	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
18	rs539254922	chr12:40878640-40878641	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
19	rs373265683	chr12:40878641-40878642	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
20	rs557555635	chr12:40878664-40878665	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
21	rs73100438	chr12:40878665-40878666	ZNF genes & repeats	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs11176825	chr12:40878689-40878690	ZNF genes & repeats	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs555363325	chr12:40878692-40878693	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
24	rs573697083	chr12:40878732-40878733	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
25	rs11176826	chr12:40878750-40878751	ZNF genes & repeats	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs577746929	chr12:40878758-40878759	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
27	rs116507256	chr12:40878777-40878778	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
28	rs185651200	chr12:40878778-40878779	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
29	rs530867720	chr12:40878782-40878783	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
30	rs549079298	chr12:40878785-40878786	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
31	rs201611778	chr12:40878786-40878787	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
32	rs560917149	chr12:40878804-40878805	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs371395758	chr12:40878820-40878821	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
34	rs528492518	chr12:40878828-40878829	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
35	rs371240818	chr12:40878843-40878844	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
36	rs2638867	chr12:40878846-40878847	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs372728333	chr12:40878869-40878870	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
38	rs538853288	chr12:40878913-40878914	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
39	rs2933358	chr12:40878915-40878916	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
40	rs551105924	chr12:40878930-40878931	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
41	rs2920826	chr12:40878934-40878935	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
42	rs111453265	chr12:40878943-40878944	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
43	rs2920825	chr12:40878953-40878954	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
44	rs2933359	chr12:40878955-40878956	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
45	rs375809053	chr12:40878959-40878960	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
46	rs369930826	chr12:40878966-40878967	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
47	rs373505144	chr12:40878967-40878968	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
48	rs376140137	chr12:40878973-40878974	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
49	rs369555064	chr12:40878978-40878979	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
50	rs2933360	chr12:40879006-40879007	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:58)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
Seminomas	18059402	CNVD
Wilms tumour	21544195	CNVD
Esophageal cancer	21851588	CNVD
Lung cancer	20668451	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Ewing''s sarcoma	21437220	CNVD
Testicular germ cell tumor	18059402	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Basal cell lymphoma	17053054	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Ewing''s sarcoma	17952124	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Cancer	20164919	CNVD
Neurodevelopmental disorder	22521361	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Renal cell carcinoma	18194544	CNVD
Breast cancer	21949216	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21637783	CNVD
Glioblastoma multiforme	21080181	CNVD
Renal cell carcinoma	19461508	CNVD
Burkitt''s lymphoma	18698080	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	17603634	CNVD
Cancer	21183584	CNVD
Hirschsprung''s Disease	21712996	CNVD
Lissencephaly	21572526	CNVD
Lung cancer	18438408	CNVD
Acute myeloid leukemia	21251322	CNVD
small cell lung cancer	20016488	CNVD
Autism	20858243	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Breast cancer	19602461	CNVD
Breast cancer	17899364	CNVD
Cancer	20164920	CNVD
Colorectal cancer	16272173	CNVD
Breast cancer	21364760	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40877600-40878800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr12:40878200-40878800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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