Variant report

Variant	esv3516380
Chromosome Location	chr4:10391704-10403177
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:10184632..10187184-chr4:10400763..10402949,2	K562	blood:
2	chr4:10120437..10124442-chr4:10402726..10405362,4	K562	blood:
3	chr4:10185450..10187184-chr4:10401056..10402949,2	K562	blood:
4	chr4:10117806..10121732-chr4:10389330..10392612,4	K562	blood:
5	chr4:10117259..10123841-chr4:10401893..10417202,19	K562	blood:
6	chr4:10390019..10393146-chr4:10400722..10404569,4	K562	blood:
7	chr4:10391155..10393700-chr4:10401011..10403355,4	MCF-7	breast:
8	chr4:10180539..10184306-chr4:10401076..10403855,3	K562	blood:
9	chr4:10391155..10393700-chr4:10401011..10403355,4	MCF-7	breast:
10	chr4:10390019..10393146-chr4:10400722..10404569,4	K562	blood:
11	chr4:10166648..10168321-chr4:10402902..10405737,2	K562	blood:
12	chr4:10370932..10373880-chr4:10390683..10392321,2	K562	blood:
13	chr4:10181802..10184742-chr4:10401642..10403855,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000223086	chromatin interactions
ENSG00000071127	chromatin interactions

Extended variants
information (count: 490 )
Associated
traits (count: 51 )

Variant overlapped rSNPs/rCNVs (count:490 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs79218995	chr4:10391812-10391813	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs542406499	chr4:10391831-10391832	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs563739414	chr4:10391839-10391840	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs570179492	chr4:10391842-10391843	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs531195013	chr4:10391860-10391861	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs114708535	chr4:10391902-10391903	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs546540198	chr4:10391931-10391932	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs564795686	chr4:10391948-10391949	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs147415467	chr4:10391975-10391976	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs139764403	chr4:10391984-10391985	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs573585803	chr4:10392040-10392041	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs117510147	chr4:10392048-10392049	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs550712977	chr4:10392067-10392068	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs115262719	chr4:10392079-10392080	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs368797698	chr4:10392085-10392086	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs539321855	chr4:10392111-10392112	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs557610258	chr4:10392127-10392128	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs566465838	chr4:10392140-10392141	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs533773279	chr4:10392142-10392143	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs62288481	chr4:10392143-10392144	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
21	rs573639540	chr4:10392165-10392166	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs543986769	chr4:10392167-10392168	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs187119943	chr4:10392194-10392195	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs150498237	chr4:10392198-10392199	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs544220316	chr4:10392258-10392259	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs113805780	chr4:10392272-10392273	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs112460892	chr4:10392314-10392315	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs60560529	chr4:10392322-10392323	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs75638572	chr4:10392323-10392324	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs564758697	chr4:10392339-10392340	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs4698045	chr4:10392354-10392355	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs189228069	chr4:10392372-10392373	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs540571895	chr4:10392378-10392379	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs561951085	chr4:10392422-10392423	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs372874516	chr4:10392429-10392430	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs552703259	chr4:10392430-10392431	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs374087636	chr4:10392431-10392432	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs529356331	chr4:10392441-10392442	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs149684816	chr4:10392448-10392449	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs374831690	chr4:10392469-10392470	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs562672461	chr4:10392477-10392478	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs532947215	chr4:10392485-10392486	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs538826592	chr4:10392565-10392566	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs368875300	chr4:10392574-10392575	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs146691201	chr4:10392611-10392612	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs140311857	chr4:10392631-10392632	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs567170777	chr4:10392641-10392642	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs537874475	chr4:10392643-10392644	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs568124111	chr4:10392708-10392709	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs78009507	chr4:10392721-10392722	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:51)

Disease	PMID	Source
Colorectal cancer	16272173	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	17603634	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Colorectal cancer	19359472	CNVD
Neuroblastoma	17533364	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Cancer	21637783	CNVD
Melanoma	21693616	CNVD
Squamous cell cancer	21044232	CNVD
Colorectal cancer	20709793	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Non-small cell lung cancer	21044232	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	17387387	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Cervical cancer	21062161	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Neuroblastoma	18923191	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Prostate cancer	18632612	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Breast cancer	21785460	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Breast cancer	21509527	CNVD
Lung cancer	18438408	CNVD
Myelofibrosis	22110671	CNVD
Hirschsprung''s Disease	21712996	CNVD
Schizophrenia	22241247	CNVD
Autosomal-dominant microtia	18179897	CNVD
Glioma	17123091	CNVD
Colorectal cancer	20459617	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21858162	CNVD
small cell lung cancer	20016488	CNVD
Neuroblastoma	20406844	CNVD

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:10387000-10403600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:10387800-10391800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr4:10387800-10397000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr4:10390000-10392200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr4:10390200-10392200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr4:10390200-10392400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr4:10391000-10391800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr4:10391400-10392000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr4:10391800-10392000	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:10396800-10399600	Enhancers	HMEC	breast
11	chr4:10397000-10399000	Enhancers	NHEK	skin
12	chr4:10397000-10400000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr4:10397200-10399200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr4:10397400-10398400	Enhancers	K562	blood
15	chr4:10397600-10399000	Enhancers	Fetal Thymus	thymus
16	chr4:10397800-10398400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr4:10398400-10403400	Weak transcription	K562	blood
18	chr4:10398600-10398800	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
19	chr4:10399000-10405600	Weak transcription	NHEK	skin
20	chr4:10399200-10402800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr4:10399600-10400000	Weak transcription	HMEC	breast
22	chr4:10400000-10400400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr4:10400000-10400600	Enhancers	HMEC	breast
24	chr4:10400400-10400600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr4:10400600-10405200	Weak transcription	HMEC	breast
26	chr4:10400600-10405400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr4:10402800-10403000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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