Variant report

Variant	esv3516620
Chromosome Location	chr17:45625053-45631851
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr17:45628856-45628986	MCF-7	breast:	n/a	n/a
2	POLR2A	chr17:45628156-45628509	SK-N-SH	brain:	n/a	n/a
3	POLR2A	chr17:45631487-45631492	MCF-7	breast:	n/a	n/a
4	POLR2A	chr17:45628901-45628923	MCF-7	breast:	n/a	n/a
5	SP1	chr17:45631808-45632504	A549	lung:	n/a	n/a
6	STAT3	chr17:45630724-45630884	MCF10A-Er-Src	breast:	n/a	n/a
7	STAT3	chr17:45630130-45630245	MCF10A-Er-Src	breast:	n/a	n/a
8	TAL1	chr17:45630859-45631054	K562	blood:	n/a	n/a
9	TEAD4	chr17:45629263-45629536	H1-hESC	embryonic stem cell:	n/a	n/a
10	TEAD4	chr17:45630830-45631013	K562	blood:	n/a	n/a

Variant related genes	Relation type
NPEPPS	TF binding region
ENSG00000206734	TF binding region

Extended variants
information (count: 255 )
Associated
traits (count: 119 )

Variant overlapped rSNPs/rCNVs (count:255 , 50 per page) page: 1 2 3 4 5 6

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs111369149	chr17:45625098-45625099	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs533941026	chr17:45625110-45625111	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs553995623	chr17:45625118-45625119	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs567790517	chr17:45625122-45625123	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs536749966	chr17:45625131-45625132	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs62073976	chr17:45625208-45625209	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs556325748	chr17:45625211-45625212	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs576336712	chr17:45625236-45625237	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs545397885	chr17:45625281-45625282	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs187029153	chr17:45625290-45625291	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs192743209	chr17:45625305-45625306	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs372726917	chr17:45625347-45625348	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs558748674	chr17:45625370-45625371	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs111954122	chr17:45625390-45625391	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs542666806	chr17:45625391-45625392	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs113546757	chr17:45625403-45625404	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs201010447	chr17:45625411-45625412	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs562348565	chr17:45625488-45625489	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs531309324	chr17:45625524-45625525	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs534866917	chr17:45625580-45625581	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs376503511	chr17:45625696-45625697	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs527564798	chr17:45625784-45625785	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs547662547	chr17:45625813-45625814	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs567448398	chr17:45625840-45625841	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs112965010	chr17:45625852-45625853	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs536348942	chr17:45625877-45625878	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs556590639	chr17:45625880-45625881	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs113932926	chr17:45625928-45625929	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs375104505	chr17:45625955-45625956	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs538733982	chr17:45625957-45625958	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs187706719	chr17:45625992-45625993	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs553378408	chr17:45625998-45625999	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs78551919	chr17:45626002-45626003	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	mRNA abundance
34	rs572452122	chr17:45626005-45626006	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs114710716	chr17:45626011-45626012	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs554752114	chr17:45626028-45626029	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs574929762	chr17:45626047-45626048	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs201818031	chr17:45626048-45626049	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs542343136	chr17:45626170-45626171	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs562570239	chr17:45626220-45626221	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs111845132	chr17:45626230-45626231	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs113487824	chr17:45626263-45626264	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs545052166	chr17:45626280-45626281	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs146602145	chr17:45626282-45626283	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs527629691	chr17:45626304-45626305	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs547677394	chr17:45626341-45626342	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs373986514	chr17:45626358-45626359	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs7209422	chr17:45626395-45626396	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	mRNA abundance
49	rs375545830	chr17:45626448-45626449	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs575307863	chr17:45626490-45626491	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:119)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Ovarian cancer	22174824	CNVD
Melanoma	18172304	CNVD
Moyamoya disease	22323933	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ovarian cancer	21781307	CNVD
Colorectal cancer	21645411	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Medulloblastoma	21979893	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell lymphomas	19863542	CNVD
Cancer	16751803	CNVD
Chordoma	21602918	CNVD
Neurofibromatosis	20686819	CNVD
Peripheral nerve sheath tumors	20686819	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Cancer	21499728	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Medulloblastoma	21292688	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	17897457	CNVD
Neuroblastoma	17327916	CNVD
Breast cancer	21264507	CNVD
Endometrial cancer	22040021	CNVD
Neuroblastoma	21484798	CNVD
Breast cancer	22028636	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Acute myeloid leukemia	20724749	CNVD
Breast cancer	21858162	CNVD
lymphocytic leukemia	21291569	CNVD
Gastric cancer	17167181	CNVD
Breast cancer	19287154	CNVD
Leukemia	20874852	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Neuroblastoma	18664255	CNVD
Neuroblastoma	17533364	CNVD
Human rectal carcinomas	16397240	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Breast cancer	17457667	CNVD
Breast cancer	16951389	CNVD
Basal cell lymphoma	17053054	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	22048815	CNVD
Breast cancer	17603634	CNVD
Follicular lymphoma	20505157	CNVD
Non-small cell lung cancer	20864512	CNVD
Cancer	21183584	CNVD
Cervical cancer	21062161	CNVD
Breast cancer	20953835	CNVD
Thyroid cancer	19087340	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
TAR Syndrome	17847015	CNVD
Neuroblastoma	18923191	CNVD
Breast cancer	17850661	CNVD
Breast cancer	19261255	CNVD
Lung cancer	16773561	CNVD
Neurocytoma	17123091	CNVD
Central neurocytomas	17123091	CNVD
Basal-like breast cancer	18066063	CNVD
Breast cancer	20031965	CNVD
Colorectal cancer	19287155	CNVD
Hereditary breast	19566914	CNVD
Ovarian cancer	19047089	CNVD
Ovarian cancer	19566914	CNVD
Triple-negative breast cancer	18950515	CNVD
Breast cancer	16846527	CNVD
Bladder cancer	21909424	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Ewing''s sarcoma	18628472	CNVD
Glioblastoma multiforme	18628472	CNVD
Leukemia	18628472	CNVD
Acute myeloid leukemia	21251322	CNVD
Ewing''s sarcoma	22429812	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
Urothelial carcinoma	21177765	CNVD
Breast cancer	16397240	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Myelofibrosis	22110671	CNVD
Prostate cancer	17217626	CNVD
Non-syndromic sensorineural hearing loss	21084979	CNVD
Autism	22817714	CNVD
Breast cancer	20409316	CNVD
Cancer	17160897	CNVD
Frontotemporal lobar degeneration	19640594	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Breast cancer	21509527	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Epithelial cancer	20478067	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:151 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:45610000-45630000	Weak transcription	Gastric	stomach
2	chr17:45610000-45638600	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr17:45610000-45639000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr17:45610000-45670600	Weak transcription	Lung	lung
5	chr17:45610000-45670600	Weak transcription	Pancreas	Pancrea
6	chr17:45610000-45676800	Weak transcription	Ovary	ovary
7	chr17:45610200-45674200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr17:45610400-45633800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr17:45610400-45637600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr17:45610400-45637800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr17:45610400-45639200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr17:45610400-45646800	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr17:45610400-45647000	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr17:45610400-45647600	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr17:45610400-45647600	Weak transcription	Osteobl	bone
16	chr17:45610400-45662600	Weak transcription	Adipose Nuclei	Adipose
17	chr17:45610400-45670600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr17:45610600-45626400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr17:45610600-45626400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr17:45610600-45637200	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr17:45610600-45647000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr17:45610600-45647000	Weak transcription	Dnd41	blood
23	chr17:45610600-45662200	Weak transcription	HSMM	muscle
24	chr17:45610600-45669200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr17:45610600-45670200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr17:45610800-45669000	Weak transcription	NH-A	brain
27	chr17:45611000-45647000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr17:45611200-45629600	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr17:45611200-45647600	Weak transcription	HSMMtube	muscle
30	chr17:45611200-45674800	Weak transcription	Primary B cells from cord blood	blood
31	chr17:45611400-45627200	Weak transcription	GM12878-XiMat	blood
32	chr17:45616000-45629400	Weak transcription	Left Ventricle	heart
33	chr17:45616600-45674600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr17:45617000-45647000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr17:45617000-45647600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr17:45617400-45629400	Weak transcription	K562	blood
37	chr17:45617400-45632200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr17:45617600-45637200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr17:45617600-45646800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr17:45618000-45649200	Weak transcription	Right Ventricle	heart
41	chr17:45618600-45626200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr17:45618600-45626200	Weak transcription	Liver	Liver
43	chr17:45618600-45637600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr17:45618600-45639000	Weak transcription	Brain Anterior Caudate	brain
45	chr17:45618600-45674600	Weak transcription	Fetal Brain Female	brain
46	chr17:45618800-45669200	Weak transcription	HUVEC	blood vessel
47	chr17:45619400-45667400	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr17:45619400-45668200	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr17:45620200-45629600	Weak transcription	Rectal Smooth Muscle	rectum
50	chr17:45621200-45626800	Weak transcription	Thymus	Thymus

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