Variant report

Variant	esv3518703
Chromosome Location	chr10:38810679-38812053
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 162 )
Associated
traits (count: 37 )

Variant overlapped rSNPs/rCNVs (count:162 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs529624334	chr10:38810679-38810680	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs560814956	chr10:38810681-38810682	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs62640125	chr10:38810683-38810684	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs201080698	chr10:38810696-38810697	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs531942364	chr10:38810697-38810698	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs560413238	chr10:38810698-38810699	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs551966412	chr10:38810707-38810708	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs571383420	chr10:38810715-38810716	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs62640126	chr10:38810730-38810731	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs62640127	chr10:38810732-38810733	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs533845775	chr10:38810736-38810737	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs547399902	chr10:38810752-38810753	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs62640128	chr10:38810756-38810757	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs146732856	chr10:38810757-38810758	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs536590442	chr10:38810762-38810763	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs556180760	chr10:38810771-38810772	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs140372439	chr10:38810772-38810773	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs538461649	chr10:38810774-38810775	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs117736203	chr10:38810782-38810783	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs577741336	chr10:38810785-38810786	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs540312603	chr10:38810827-38810828	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs369835021	chr10:38810830-38810831	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs372631008	chr10:38810832-38810833	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs542958844	chr10:38810837-38810838	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs563046903	chr10:38810841-38810842	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs116978863	chr10:38810846-38810847	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs545642245	chr10:38810862-38810863	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs565457958	chr10:38810863-38810864	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs527419843	chr10:38810867-38810868	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs7080351	chr10:38810878-38810879	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs7080000	chr10:38810890-38810891	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs12774518	chr10:38810905-38810906	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs187556374	chr10:38810913-38810914	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs200498182	chr10:38810942-38810943	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs373389197	chr10:38810947-38810948	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs549715674	chr10:38810948-38810949	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs11011603	chr10:38810951-38810952	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs533765281	chr10:38810969-38810970	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs538522338	chr10:38810978-38810979	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs117357731	chr10:38810982-38810983	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs118043708	chr10:38810996-38810997	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs534347206	chr10:38811009-38811010	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs368112990	chr10:38811013-38811014	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs574035838	chr10:38811015-38811016	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs62640129	chr10:38811017-38811018	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs75369526	chr10:38811027-38811028	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs62648639	chr10:38811028-38811029	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs372859765	chr10:38811029-38811030	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs192538121	chr10:38811033-38811034	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs556496616	chr10:38811035-38811036	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:37)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	20459617	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Central neurocytomas	17123091	CNVD
Neurocytoma	17123091	CNVD
small cell lung cancer	20016488	CNVD
Schizophrenia	20967226	CNVD
Myelofibrosis	22110671	CNVD

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38772400-38818800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
2	chr10:38772400-38818800	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr10:38772400-38818800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
4	chr10:38772400-38818800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
5	chr10:38772400-38818800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
6	chr10:38772400-38818800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
7	chr10:38772400-38818800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
8	chr10:38772400-38818800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
9	chr10:38772400-38818800	ZNF genes & repeats	Primary T cells from cord blood	blood
10	chr10:38772400-38818800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
11	chr10:38772400-38818800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
12	chr10:38772400-38818800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
13	chr10:38772400-38818800	ZNF genes & repeats	Brain Anterior Caudate	brain
14	chr10:38772400-38818800	ZNF genes & repeats	Brain Hippocampus Middle	brain
15	chr10:38772400-38818800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
16	chr10:38772400-38818800	ZNF genes & repeats	Brain Substantia Nigra	brain
17	chr10:38772400-38818800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
18	chr10:38772400-38818800	ZNF genes & repeats	Fetal Brain Male	brain
19	chr10:38772400-38818800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
20	chr10:38772400-38818800	ZNF genes & repeats	Fetal Lung	lung
21	chr10:38772400-38818800	ZNF genes & repeats	Gastric	stomach
22	chr10:38772400-38818800	ZNF genes & repeats	Rectal Smooth Muscle	rectum
23	chr10:38772400-38818800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
24	chr10:38772400-38818800	ZNF genes & repeats	Dnd41	blood
25	chr10:38772400-38818800	ZNF genes & repeats	GM12878-XiMat	blood
26	chr10:38772400-38819000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr10:38772400-38819000	ZNF genes & repeats	Adipose Nuclei	Adipose
28	chr10:38772400-38819000	ZNF genes & repeats	Liver	Liver
29	chr10:38772400-38819000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
30	chr10:38772400-38819000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
31	chr10:38772600-38818800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
32	chr10:38772600-38818800	ZNF genes & repeats	Brain Cingulate Gyrus	brain
33	chr10:38772600-38818800	ZNF genes & repeats	Fetal Kidney	kidney
34	chr10:38772600-38818800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
35	chr10:38772800-38818800	ZNF genes & repeats	Primary B cells from cord blood	blood
36	chr10:38773000-38818800	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
37	chr10:38773800-38818800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
38	chr10:38774800-38818800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
39	chr10:38781200-38814000	ZNF genes & repeats	HepG2	liver
40	chr10:38784600-38818800	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
41	chr10:38786200-38818800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
42	chr10:38787800-38818800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr10:38787800-38818800	ZNF genes & repeats	Fetal Heart	heart
44	chr10:38792200-38818800	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
45	chr10:38793200-38818000	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
46	chr10:38797600-38815200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr10:38798000-38818800	ZNF genes & repeats	Colon Smooth Muscle	Colon
48	chr10:38800800-38818800	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
49	chr10:38802600-38818800	ZNF genes & repeats	Spleen	Spleen
50	chr10:38803600-38818800	ZNF genes & repeats	Colonic Mucosa	Colon

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